| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,501,186 | (T)6→7 | intergenic (‑187/‑440) | yi41 ← / → b4279 | IS4 hypothetical protein/putative transport protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,501,180 | 1 | . | T | 95.1% | 241.3 / 6.8 | 81 | intergenic (‑181/‑446) | yi41/b4279 | IS4 hypothetical protein/putative transport protein |
| Reads supporting (aligned to +/- strand): ref base . (2/2); new base T (39/38); total (41/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 | |||||||||||
CAAACTATCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑G‑T‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCT > NC_000913/4501106‑4501250 | cAAACTATCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑G‑t < 2:2187668/76‑1 (MQ=255) aaaCTATCAGCGACAAAAATATGCTGAAGTTGTGACGTCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑G‑t‑t < 2:3887159/76‑1 (MQ=255) aCTATCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑G‑t‑t‑tt > 2:2530548/1‑76 (MQ=255) tATCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑G‑t‑t‑ttt‑t > 1:3418749/1‑76 (MQ=255) tATCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑G‑t‑t‑ttt‑t > 1:1821987/1‑76 (MQ=255) aTCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAAAGCGTTTTTTTATGTGGATTGCTT‑G‑t‑t‑ttt‑tt > 1:2013131/1‑75 (MQ=255) cTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCt < 2:3385948/76‑1 (MQ=255) cTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCt > 1:3236616/1‑76 (MQ=255) tgcAAAAATATGCTCAAGTGGTGACATCAGGAACAAAACGCGTGTTGTTATGTGGATGGCTT‑GTT‑T‑TTT‑TGATCTg < 2:1362706/74‑1 (MQ=255) tACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTg < 1:2701289/76‑1 (MQ=255) tACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTg < 2:1348485/76‑1 (MQ=255) aCAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTgg < 2:4846865/76‑1 (MQ=255) aCAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTgg > 1:4835734/1‑76 (MQ=255) aCAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTgg < 2:4135319/76‑1 (MQ=255) cAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGt > 2:4059032/1‑76 (MQ=255) aaaaaTATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGta > 2:4167053/1‑76 (MQ=255) aaaaTATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGtat > 2:4008139/1‑76 (MQ=255) aaaaTATGCTCAATCTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGtat < 1:899293/76‑1 (MQ=255) aaaTATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGtata < 1:1966193/76‑1 (MQ=255) aaTATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATaa > 2:2797256/1‑76 (MQ=255) atatGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAAc < 2:2374455/76‑1 (MQ=255) atatGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAAc > 1:2939703/1‑76 (MQ=255) tatGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACa > 2:3757604/1‑76 (MQ=255) tatGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACa < 2:1737101/76‑1 (MQ=255) tGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAgg > 1:2937921/1‑76 (MQ=255) tGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAgg > 1:4267427/1‑76 (MQ=255) tCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGtat > 1:2245394/1‑76 (MQ=255) cAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGtata < 1:176719/76‑1 (MQ=255) cAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGtata < 1:1484502/76‑1 (MQ=255) aaTTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATaa > 1:1757304/1‑76 (MQ=255) aaTTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATaa < 1:1484852/76‑1 (MQ=255) aaTTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATaa > 1:654433/1‑76 (MQ=255) aTTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATaaa > 2:2777568/1‑76 (MQ=255) tttGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAg > 1:3471326/1‑76 (MQ=255) tttGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAg < 1:4863676/76‑1 (MQ=255) ttGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAgg > 1:4118328/1‑76 (MQ=255) tgtgACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGt < 2:2507259/76‑1 (MQ=255) tgtgACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGt < 2:4057040/76‑1 (MQ=255) gtgACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGta < 2:3892112/76‑1 (MQ=255) tgACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGtat > 1:2487033/1‑76 (MQ=255) tgACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGtat > 2:4133768/1‑76 (MQ=255) tgACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGtat > 2:4127099/1‑76 (MQ=255) tCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGa < 1:1333958/76‑1 (MQ=255) cAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGaa < 1:4116848/76‑1 (MQ=255) cAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑G‑TCT‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGaa < 2:273347/76‑1 (MQ=255) aaCAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGc < 1:1412135/76‑1 (MQ=255) aCAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCa < 1:3617030/76‑1 (MQ=255) cAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCaa > 1:1357403/1‑76 (MQ=255) cAAAACGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCaa > 1:1362364/1‑76 (MQ=255) aaaaCGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCaaa > 1:2039313/1‑76 (MQ=255) aaaaCGCGTTTTGTGATGAGGTTTGCTTGG‑T‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCaaa > 2:2589819/1‑76 (MQ=25) aaaCGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAg < 1:576713/76‑1 (MQ=255) aaaCGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAg < 2:4145569/76‑1 (MQ=255) aaCGCGTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGa < 1:4659865/76‑1 (MQ=255) aaCGCGTTTTGTTATGTGGATTGCTT‑G‑T‑T‑TTTCTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGa < 1:1909582/76‑1 (MQ=255) cgcgTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGaaa < 1:2738776/76‑1 (MQ=255) gcgTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAAt < 2:444069/76‑1 (MQ=255) gcgTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAAt > 1:1413980/1‑76 (MQ=255) gcgTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAAt < 2:2097361/76‑1 (MQ=255) gcgTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAAt > 1:3840096/1‑76 (MQ=255) gcgTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAAt > 2:3509829/1‑76 (MQ=255) cgTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATa < 1:569565/76‑1 (MQ=255) agTTTTGTTCTGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACTGGTATAAAGGTATACATAACCGCAACGAAATa > 1:828094/2‑76 (MQ=18) gTTTTGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATAc < 2:2599504/76‑1 (MQ=255) ttttGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACt > 1:1243225/1‑76 (MQ=255) tttGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTg > 2:4001761/1‑76 (MQ=255) tttGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTg < 2:3841613/76‑1 (MQ=255) ttGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGc < 1:3790739/76‑1 (MQ=255) tGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCa > 2:86241/1‑76 (MQ=255) tGTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCa > 2:725516/1‑76 (MQ=255) gTTATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCaa < 2:3908723/76‑1 (MQ=255) tATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAg > 1:1121164/1‑76 (MQ=255) tATGTGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAg < 1:2454040/76‑1 (MQ=255) tATGTGGATTGCTT‑G‑T‑TCTTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAg > 1:2010157/1‑76 (MQ=255) tATGAGGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAg > 1:1098937/1‑76 (MQ=37) tgtgGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGa < 2:52650/76‑1 (MQ=255) tgGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGaaa > 2:3432534/1‑76 (MQ=255) tgGATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGaaa < 2:3615198/76‑1 (MQ=255) ggATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGaaca > 1:1458382/1‑74 (MQ=37) ggATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGaaaa < 2:1465796/76‑1 (MQ=255) ggATTGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGaaaa > 1:1417431/1‑76 (MQ=255) ttGCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAg < 2:2540481/76‑1 (MQ=255) gCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCt < 2:152405/76‑1 (MQ=255) gCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCt > 1:3652279/1‑76 (MQ=255) gCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCt > 2:2784695/1‑76 (MQ=255) gCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCt > 2:2957012/1‑76 (MQ=255) gCTT‑GTT‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCt > 2:4599688/1‑76 (MQ=255) | CAAACTATCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTT‑G‑T‑T‑TTT‑TGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCT > NC_000913/4501106‑4501250 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |