| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,593,336 | +G | intergenic (‑23/‑208) | yjjM ← / → yjjN | hypothetical protein/putative oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,593,335 | 1 | . | G | 98.8% | 220.7 / ‑3.3 | 82 | intergenic (‑22/‑209) | yjjM/yjjN | hypothetical protein/putative oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (30/51); total (30/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
TTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAT‑G‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTA > NC_000913/4593260‑4593401 | ttCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAt < 1:3549421/76‑1 (MQ=255)ttCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAt < 1:3422212/76‑1 (MQ=255)ttCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAt > 1:265236/1‑76 (MQ=255) tCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAT‑g < 1:1207208/76‑1 (MQ=255) gcgTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAT‑gga < 2:2424821/76‑3 (MQ=255) cgTAAGTGGCTGAGAATATGAAGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAT‑ggaa > 1:2024985/1‑73 (MQ=255) cgTAAGAGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAT‑ggaa > 1:2120366/1‑73 (MQ=255) gTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTggg > 1:1171688/1‑76 (MQ=255) gTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTggg > 2:1425017/1‑76 (MQ=255) gTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTggg > 1:1280029/1‑76 (MQ=255) gCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGaa > 1:4485847/1‑76 (MQ=255) gCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGaa < 1:369440/76‑1 (MQ=255) cTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAg < 2:3878915/76‑1 (MQ=255) tGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAgg < 2:4727803/76‑1 (MQ=255) tGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAgg > 2:3584782/1‑76 (MQ=255) gagaATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAggg > 1:732907/1‑76 (MQ=255) agaATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGa > 1:4051585/1‑76 (MQ=255) gaATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGat > 1:2224364/1‑76 (MQ=255) gaATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGat < 2:3200147/76‑1 (MQ=255) gaATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGat > 2:2987621/1‑76 (MQ=255) tGACGCACTGTGGTGCGGCTGGTGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGAc < 2:1643328/76‑1 (MQ=255) tGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGAc < 2:907405/76‑1 (MQ=255) gACTCACTGTGGTGCGGCTGATGTTGTCCATTTCCGCCAGCGCTCTTTGCGATGG‑AAGTGGGGAAGGGATATGAcc < 2:2491406/76‑1 (MQ=255) gACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGAcc < 1:3203596/76‑1 (MQ=255) aCGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGAcac > 2:1731798/1‑74 (MQ=255) cGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGAcccc < 1:3349595/76‑1 (MQ=255) cGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGAcccc < 2:2213599/76‑1 (MQ=255) cGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGAcccc < 2:2086880/76‑1 (MQ=255) cGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGAcccc > 1:1067561/1‑76 (MQ=255) cGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGAcccc < 2:3808174/76‑1 (MQ=255) cACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCcgc < 2:3224607/76‑1 (MQ=255) cACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCcgc < 1:59093/76‑1 (MQ=255) cACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCcgc < 2:3176411/76‑1 (MQ=255) aCTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCcgcg > 2:4775709/1‑76 (MQ=255) aCTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCcgcg < 1:2987621/76‑1 (MQ=255) gtggtgCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCa > 1:4684632/1‑76 (MQ=255) gtggtgCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCa < 2:4849308/76‑1 (MQ=255) tggtgCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCat < 1:4055661/76‑1 (MQ=255) ggtgCGGCTGATGTTATACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCata < 1:4652373/76‑1 (MQ=255) gtgCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCatat < 1:3012424/76‑1 (MQ=255) gtgCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCatat < 1:847995/76‑1 (MQ=255) tgCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGCTGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATatc > 2:2386011/1‑76 (MQ=255) tgCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATatc < 2:2297793/76‑1 (MQ=255) gCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCataccc > 2:115247/1‑73 (MQ=255) gCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATatca < 1:3969748/76‑1 (MQ=255) cGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATatcat > 2:1037032/1‑76 (MQ=255) ggCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGCCCCCGCGCCATatcatc < 1:4331534/76‑1 (MQ=255) ggCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATatcatc > 1:2906617/1‑76 (MQ=255) ggCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATatcatc > 2:2288681/1‑76 (MQ=255) gCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATAtcatca < 2:2850316/76‑1 (MQ=255) gCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATAtcatca < 1:2636615/76‑1 (MQ=255) gCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATAtcatca > 2:2513498/1‑76 (MQ=255) gCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATAtcatca < 2:4396257/76‑1 (MQ=255) gCTGATGTTGTACATTTCCGCCAGCGCACTGTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATAtcatca < 2:906625/76‑1 (MQ=255) cTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCaa > 1:1548172/1‑76 (MQ=255) cTGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCAGATCATCaa > 1:1499586/1‑76 (MQ=255) tGATGTTGTGCATTGCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAAt < 2:684886/76‑1 (MQ=255) tGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAAt < 2:4314877/76‑1 (MQ=255) tGATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAAt < 2:3703777/76‑1 (MQ=255) gATGTTGTACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATg > 2:1766964/1‑76 (MQ=255) tgttgtACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGAc < 2:638233/76‑1 (MQ=255) tgttgtACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGAc < 2:4010557/76‑1 (MQ=255) ttgtACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCt < 2:4337123/76‑1 (MQ=255) gtACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTgg < 1:3535143/76‑1 (MQ=255) tACATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGt < 2:2455481/76‑1 (MQ=255) cATTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTa < 2:4056215/76‑1 (MQ=255) aTTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTaa > 1:2975800/1‑76 (MQ=255) aTTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTaa < 1:1679976/76‑1 (MQ=255) aTTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTaa > 2:4570924/1‑76 (MQ=255) aTTTCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTaa > 1:3002940/1‑76 (MQ=255) tttCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAAt < 1:3751159/76‑1 (MQ=255) tgtCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAAt < 1:3786136/74‑1 (MQ=255) tgacGCCAGCGAACTTTGCGATGG‑AAGCGGGGCAGGGATATGACCCCACGCCTTAGCATCAACGACCTAGTTATTc > 2:2595545/4‑76 (MQ=255) tCCGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATca < 1:374408/76‑1 (MQ=255) ccGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATcac < 1:3159649/76‑1 (MQ=255) ccGCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATcac < 1:454206/76‑1 (MQ=255) gCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACAt > 1:4091960/1‑76 (MQ=255) gCCAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACAt < 2:4797391/76‑1 (MQ=255) ccAGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACAtt < 1:2378949/76‑1 (MQ=255) aGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATtgt < 2:1948074/76‑1 (MQ=255) aGCGCACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATtgt > 1:2282757/1‑76 (MQ=255) cgcCCTTTGCGAT‑GTAAGTGGTGCAGTGATATGCCCCCTGTCCATATCATCAATGTCCTGTTTAATCACATTTTgg < 2:3550867/76‑1 (MQ=255) gcACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGc < 2:4727930/76‑1 (MQ=255) gcACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGc < 2:1960042/76‑1 (MQ=255) gcACTTTGCGATGG‑AAGGGGGGAAGGGATATGACACCGCGCCATAGCATCAATGAACTGGTTAATCACATTGTGGc > 1:1947752/1‑76 (MQ=255) cACTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCg > 2:4035922/1‑76 (MQ=255) cTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTa < 2:579238/76‑1 (MQ=255) cTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTa < 2:584114/76‑1 (MQ=255) cTTTGCGATGG‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTa < 2:4253055/76‑1 (MQ=255) | TTCGCGTAAGTGGCTGAGAATATGACGCACTGTGGTGCGGCTGATGTTGTACATTTCCGCCAGCGCACTTTGCGAT‑G‑AAGTGGGGAAGGGATATGACCCCGCGCCATATCATCAATGACCTGGTTAATCACATTGTGGCGTA > NC_000913/4593260‑4593401 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |