| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,980,940 | +C | coding (1/363 nt) coding (627/627 nt) |
araH ← araH ← |
ABC‑type arabinose transport system permease component ABC‑type arabinose transport system permease component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,980,939 | 1 | . | C | 99.0% | 279.1 / NA | 105 | A210G (GCC→GGC) | araH | ABC‑type arabinose transport system permease component |
| Reads supporting (aligned to +/- strand): ref base . (1/0); major base C (73/30); minor base A (1/0); total (75/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
Only 100 of 113 total aligned reads displayed.
ATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGG‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATA > NC_000913/1980864‑1981009 | aTCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTTGTGCGAACAACCGGTACACCCGCCAGACGCG‑Cgg > 2:3050811/1‑76 (MQ=255)aTCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑Cgg > 2:4503303/1‑76 (MQ=255) tCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGG‑c < 1:761910/76‑1 (MQ=255) gCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGG‑cct < 1:940989/76‑3 (MQ=255) gCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGG‑cct < 2:1305077/76‑3 (MQ=255) cTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGG‑cctc < 1:3022839/76‑4 (MQ=255) agaCCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTc < 2:1584162/74‑1 (MQ=255) aTACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTc > 2:2535992/1‑76 (MQ=255) cAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTc > 1:1305797/1‑76 (MQ=255) ggCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTccc < 1:3641331/76‑1 (MQ=255) ggCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTccc > 1:2778416/1‑76 (MQ=255) gCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCg > 2:2930942/1‑76 (MQ=255) ccTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGc > 1:3097781/1‑76 (MQ=255) ccTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCGCGTCGTTCCCGc > 1:3983113/1‑76 (MQ=255) cTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGcc > 1:2459100/1‑76 (MQ=255) cTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCCTTCCCGcc > 1:481895/1‑76 (MQ=255) tGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCa > 2:1415674/1‑76 (MQ=255) tGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCa > 1:4161754/1‑76 (MQ=255) agagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGACTCTTCGTTCCCGCCaac > 1:2002299/1‑75 (MQ=255) gagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCTAATc < 1:3839835/76‑1 (MQ=255) gagaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATc > 2:2480047/1‑76 (MQ=255) agaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCg > 2:4048866/1‑76 (MQ=255) agaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCg < 1:335747/76‑1 (MQ=255) agaACAAAGATAATAATCTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATcc > 2:4059473/1‑75 (MQ=255) gaACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGc < 2:2332949/76‑1 (MQ=255) aaaCAAAGATAATAATTTGGGTGCGAACAGCGGGTCCACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGc < 1:2774400/75‑1 (MQ=255) aaCAAGGCTAATAATTTTGGGGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGcc < 2:1454794/76‑1 (MQ=255) aaCAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGcc > 1:4501254/1‑76 (MQ=255) cAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAg > 2:4263548/1‑76 (MQ=255) cAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAg > 2:3221510/1‑76 (MQ=255) aaaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAgg > 1:4454774/1‑76 (MQ=255) aaaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAgg > 1:1040017/1‑76 (MQ=255) aaaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAgg > 1:1236750/1‑76 (MQ=255) aaaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAgg > 1:3752057/1‑76 (MQ=255) aaaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAgg > 1:2248116/1‑76 (MQ=255) aaaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACCCG‑CGGCCTCTTCGTCCCCCCCACTCCCCCgg > 2:310228/1‑76 (MQ=255) aaGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAggg > 1:1952330/1‑76 (MQ=255) aaGAGAATACTTTTGGGGCGAACAACCGGTACACCCGCCGAACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAggg < 2:4845650/76‑1 (MQ=255) aGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAgggc > 2:1351312/1‑75 (MQ=255) aGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGgt > 2:1363319/1‑76 (MQ=255) aGATAATAATTTGGGTGCGACCACCCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGgt < 1:506130/76‑1 (MQ=255) gATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGgtg > 2:4126807/1‑76 (MQ=255) aataatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTa > 1:532960/1‑76 (MQ=255) aataatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTa > 1:501031/1‑76 (MQ=255) ataatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTAc > 1:3562978/1‑76 (MQ=255) ataatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTAc > 2:4405733/1‑76 (MQ=255) taatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACg > 2:1594331/1‑76 (MQ=255) aaatTTTGGGCCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACg < 2:4789975/75‑1 (MQ=255) aatTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAACCGCCAGGGTGTTACgc > 2:1431856/1‑75 (MQ=255) atTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGAc < 1:4840521/76‑1 (MQ=255) atTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGAc > 2:3909362/1‑76 (MQ=255) atTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGAc > 1:3269673/1‑76 (MQ=255) atTTGGGTGCGACCACCCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGAc < 1:545039/76‑1 (MQ=255) ttGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCaa > 1:3527770/1‑76 (MQ=255) tgggTGCGACCACCCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCaa < 1:3820269/74‑1 (MQ=255) tGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCaaa > 1:2307339/1‑76 (MQ=255) tGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGCTACGAACaaa > 1:4070781/1‑76 (MQ=255) ggTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCaacg > 2:1085255/1‑74 (MQ=255) gTGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAgg > 1:2196755/1‑76 (MQ=255) tGCGAACAACCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggg > 1:816718/1‑75 (MQ=255) gCGACCACCCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtg < 1:4420355/76‑1 (MQ=255) gAACACCCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAggtggt < 2:4543446/76‑1 (MQ=255) aacaacCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGtt > 2:2144020/1‑76 (MQ=255) aacaacCGGTAAACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGCGTGTTACGACCAAAGGTGGtt > 1:4304887/1‑76 (MQ=255) acaacCGGTACCCCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGttt < 2:1093874/76‑1 (MQ=255) caacCGGTACCCCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGtttt < 2:1966673/76‑1 (MQ=255) caacCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGGGGtttt > 2:67894/1‑76 (MQ=255) caacCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGGGGtttt > 2:1170561/1‑76 (MQ=255) acacGGTACACCCGCCATGCGCG‑CGGCCTGTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTa < 2:700095/73‑1 (MQ=255) aacCGGTACACCCGCCAGACGCGCCCC‑CCCGTCGTTCCCGCCACTCCCCAGGGTGTTACGACCAAAGGCGGtttct > 2:1043609/1‑74 (MQ=255) aacCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTa > 2:2957171/1‑76 (MQ=255) acCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTAt < 1:3934037/76‑1 (MQ=255) acCGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTAt < 1:3905376/76‑1 (MQ=255) cGGTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTc > 2:1206759/1‑76 (MQ=255) ggTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTca > 2:425510/1‑76 (MQ=255) ggTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGCGGTTTTATTca > 2:220199/1‑76 (MQ=255) gTACACCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcag > 2:1611022/1‑76 (MQ=255) acgcccGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcagca < 1:3623503/73‑1 (MQ=255) acacCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcagca > 1:4003489/1‑76 (MQ=255) acacCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGGTTTATTcagac > 1:1389130/1‑74 (MQ=255) cacCCGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTcagcag > 2:2958524/1‑76 (MQ=255) ccccGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCagcagc < 1:57717/75‑1 (MQ=255) cccGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAgcagca > 1:2601371/1‑76 (MQ=255) cccGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTGTTATTCAgcagca > 2:3585626/1‑76 (MQ=255) ccGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCaa > 2:846352/1‑76 (MQ=255) ccGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCaa < 1:707975/76‑1 (MQ=255) ccGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCaa < 1:4612246/76‑1 (MQ=255) cGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCaaa < 1:4019603/76‑1 (MQ=255) cGCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCaaa > 1:3977054/1‑76 (MQ=255) gCCAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTAAGACCAAAGGTGGTTTTATTCAGCAGCAAAc > 1:4593091/1‑76 (MQ=255) cAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCa > 1:2898394/1‑76 (MQ=255) cAGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGCGGTTTTATTCAGCAGCAAACCa > 2:2314641/1‑76 (MQ=255) aGACGCG‑CGGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCaa > 2:2913854/1‑76 (MQ=255) gccgcg‑cgGCCTCTTCGTCCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCaaa < 2:3766642/74‑1 (MQ=255) gcg‑cgGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGAt > 1:3461969/1‑76 (MQ=255) gcg‑cgGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGAt > 1:255074/1‑76 (MQ=255) gcg‑cgGCCTCTGCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGAt < 1:2480047/76‑1 (MQ=255) cg‑cgGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATa > 1:2455480/1‑76 (MQ=255) cg‑cgGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATa > 1:1454379/1‑76 (MQ=255) cg‑cgGCCTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATa > 1:1205300/1‑76 (MQ=255) | ATCGCTGATACCAGGCCTGAGAGAACAAAGATAATAATTTTGGTGCGAACAACCGGTACACCCGCCAGACGCG‑CGG‑CTCTTCGTTCCCGCCAATCGCCAGGGTGTTACGACCAAAGGTGGTTTTATTCAGCAGCAAACCAAAGATA > NC_000913/1980864‑1981009 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |