BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,896,819	+C	coding (622/657 nt)	ygcU ←	putative oxidoreductase subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,896,818	1	.	C	100.0%	298.0 / NA	111	A208G (GCA→GGA)	ygcU	putative oxidoreductase subunit
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (72/39); total (72/39)

Only 100 of 119 total aligned reads displayed.

AAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTG‑CGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCC  >  NC_000913/2896744‑2896888

aagaGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTG‑c                                                                       >  2:4345907/1‑76 (MQ=255)

 agagGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTG‑cc                                                                      >  2:248378/1‑75 (MQ=255)

  gagGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTG‑ccg                                                                     <  1:1306036/76‑3 (MQ=255)

  gagGTTGTTTTCCGGGGAGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTG‑ccg                                                                     >  2:2115870/1‑74 (MQ=255)

   agGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTG‑ccga                                                                    <  1:3522608/76‑4 (MQ=255)

   agGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTG‑ccga                                                                    >  2:4006141/1‑73 (MQ=255)

   agGTTGTTTGCCGGGGTGAATTGAAAGATTTGCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGGTG‑ccga                                                                    <  1:3539576/76‑4 (MQ=255)

       tgttTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCgatgat                                                                 <  1:3376744/76‑1 (MQ=255)

           ttCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGatgatgatg                                                             >  2:1818694/1‑76 (MQ=255)

            tCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGAtgt                                                            >  1:4064017/1‑76 (MQ=255)

            tCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGAtgt                                                            <  1:2718162/76‑1 (MQ=255)

            tCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGACGATGAtgt                                                            >  1:666881/1‑76 (MQ=255)

              cGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATTATGCGa                                                          >  2:1546654/1‑76 (MQ=255)

              cGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGa                                                          <  1:3762326/76‑1 (MQ=255)

               ggggTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGAc                                                         >  1:1223574/1‑76 (MQ=255)

                gggTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACg                                                        >  1:1283442/1‑76 (MQ=255)

                gggTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACg                                                        <  1:4626262/76‑1 (MQ=255)

                gggTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACg                                                        >  1:1383370/1‑76 (MQ=255)

                 ggTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGa                                                       >  1:3348939/1‑76 (MQ=255)

                  gTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGaa                                                      >  1:3594057/1‑76 (MQ=255)

                  gTGAATTTAAAGATTTTCACTGTTACTTCAGTGATAGAGCACAATGCACCTTCGTTGCCGATGAGCATGTGACGaa                                                      >  2:757710/1‑76 (MQ=255)

                    gAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATg                                                    >  1:567787/1‑76 (MQ=255)

                     aaTTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGt                                                   >  1:4364192/1‑76 (MQ=255)

                     aaTTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGt                                                   <  2:3102046/76‑1 (MQ=255)

                     aaTTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGt                                                   >  1:1630195/1‑76 (MQ=255)

                       tttAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTcc                                                 >  2:3290066/1‑76 (MQ=255)

                       tttAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTcc                                                 <  1:1583294/76‑1 (MQ=255)

                       tttAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGACGATGTGCCGAATGTcc                                                 >  2:613625/1‑76 (MQ=255)

                        ttAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCg                                                <  2:3445274/76‑1 (MQ=255)

                         tAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCgg                                               >  2:1163099/1‑76 (MQ=255)

                          aaaGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCggg                                              >  2:1478351/1‑76 (MQ=255)

                          aaaGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCggg                                              >  1:1005824/1‑76 (MQ=255)

                           aaGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGc                                             >  2:1293497/1‑76 (MQ=255)

                            aGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGcc                                            <  2:398268/76‑1 (MQ=255)

                            aGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGcc                                            >  1:4511456/1‑76 (MQ=255)

                             gATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGACTGTCCGGGCCa                                           >  2:53721/1‑76 (MQ=255)

                              aTTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAg                                          >  2:1417382/1‑76 (MQ=255)

                              aTTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAg                                          >  1:1914973/1‑76 (MQ=255)

                               ttttCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGc                                         >  1:4801640/1‑76 (MQ=255)

                                  tCACTGTTCATTAAGTGATATAGCACAATCCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCcgc                                      <  1:392607/76‑1 (MQ=255)

                                  tCACTGTTACTTCAGTGATATAGCACAATGCCCCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCcgc                                      <  2:3369427/76‑1 (MQ=255)

                                  tCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCcgc                                      >  1:1196458/1‑76 (MQ=255)

                                  tCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCcgc                                      >  2:3178213/1‑76 (MQ=255)

                                  tCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCcgc                                      >  2:4115618/1‑76 (MQ=255)

                                     cTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCcgcgcg                                   >  1:4324449/1‑76 (MQ=255)

                                      tGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCgcgg                                  <  1:2895223/76‑1 (MQ=255)

                                      tGTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCgcgg                                  >  1:2057572/1‑76 (MQ=255)

                                       gTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCgcggc                                 >  1:3504897/1‑76 (MQ=255)

                                       gTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCgcggc                                 >  1:1820277/1‑76 (MQ=255)

                                       gTTACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCgcggc                                 >  2:1231410/1‑76 (MQ=255)

                                        ttACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCgcggcg                                >  2:3286777/1‑76 (MQ=255)

                                        ttACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCgcggcg                                >  2:752952/1‑76 (MQ=255)

                                         tACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCgcggcgg                               >  2:1146730/1‑75 (MQ=255)

                                         tACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGt                               >  2:2353939/1‑76 (MQ=255)

                                         tACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGt                               <  1:899743/76‑1 (MQ=255)

                                         tACTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGt                               <  1:1395284/76‑1 (MQ=255)

                                          aCTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTg                              >  1:4012092/1‑76 (MQ=255)

                                          aCTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTg                              <  2:1313245/76‑1 (MQ=255)

                                           cTTCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCgggg                             >  1:192871/1‑76 (MQ=255)

                                             tCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCa                           <  1:2639214/76‑1 (MQ=255)

                                             tCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCa                           <  1:2200360/76‑1 (MQ=255)

                                             tCAGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCa                           <  2:4225325/76‑1 (MQ=255)

                                               aGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACg                         >  2:283300/1‑76 (MQ=255)

                                               aGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACg                         <  1:3290066/76‑1 (MQ=255)

                                               aGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACg                         >  1:1284269/1‑76 (MQ=255)

                                               aGTGATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACg                         >  2:809674/1‑76 (MQ=255)

                                                  gATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGttt                      >  2:4092992/1‑76 (MQ=255)

                                                  gATATAGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGttt                      >  2:3480153/1‑76 (MQ=255)

                                                    tataGCACAATGCACCTTCGTTGCCGGTGATGATGCGACGAATGTCCGGGCCAGCCGCGCGGCGTGCCCCGttttt                    >  2:2814143/1‑76 (MQ=255)

                                                    tataGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCCGCCGCGCGGCGTGGCCCGttttt                    >  2:1423007/1‑76 (MQ=255)

                                                    tataGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGttttt                    >  2:2795909/1‑76 (MQ=255)

                                                     ataGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCCCGTTTTTa                   >  2:2655527/1‑76 (MQ=255)

                                                      taGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTaa                  >  2:2478919/1‑76 (MQ=255)

                                                       aGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTTAt                 >  1:4607392/1‑76 (MQ=255)

                                                       aGCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAAt                 <  1:500036/76‑1 (MQ=255)

                                                        gCACAATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATg                >  2:2009306/1‑76 (MQ=255)

                                                         cacaATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGc               >  2:3084382/1‑76 (MQ=255)

                                                          acaATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCg              >  1:1819561/1‑76 (MQ=255)

                                                          acaATGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCg              >  1:4048971/1‑76 (MQ=255)

                                                            actGCACCTTCGTTGCCGATGATGATGTGCCGACTGTCCGTGACAGCCGCTCGGCGTTGCACGTGTTTCATTCgtt            >  1:3246723/3‑75 (MQ=255)

                                                            aaTGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCgtg            <  1:920920/76‑1 (MQ=255)

                                                            aaTGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCgtg            >  1:3217089/1‑76 (MQ=255)

                                                             aTGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCgtgt           <  2:1914972/76‑1 (MQ=255)

                                                             aTGCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCgtgt           >  2:3899762/1‑76 (MQ=255)

                                                             aTGCACCGTCGGTGCCGATGATGATGTGGCGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCgtgt           <  2:250691/76‑1 (MQ=255)

                                                               gCACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGa         >  1:3893873/1‑76 (MQ=255)

                                                                cACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGAc        <  1:3010080/76‑1 (MQ=255)

                                                                cACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGAc        >  2:2436414/1‑76 (MQ=255)

                                                                cACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGAc        <  2:3605350/76‑1 (MQ=255)

                                                                cACCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGAc        >  2:2542050/1‑76 (MQ=255)

                                                                 aCCTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACg       <  1:4324737/76‑1 (MQ=255)

                                                                   cTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGt     <  1:947769/76‑1 (MQ=255)

                                                                   cTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGt     <  1:4397262/76‑1 (MQ=255)

                                                                   cTTCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGt     <  1:1293498/76‑1 (MQ=255)

                                                                     tCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGc   >  1:3035364/1‑76 (MQ=255)

                                                                     tCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGc   >  1:4805934/1‑76 (MQ=255)

                                                                     tCGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGc   <  1:613625/76‑1 (MQ=255)

                                                                      cGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGcc  <  2:3956750/76‑1 (MQ=255)

                                                                      cGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGcc  <  2:1574693/76‑1 (MQ=255)

                                                                      cGTTGCCGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAAGGCGTGTGTCGGTGcc  >  2:4054949/1‑76 (MQ=255)

AAGAGGTTGTTTTCCGGGGTGAATTTAAAGATTTTCACTGTTACTTCAGTGATATAGCACAATGCACCTTCGTTG‑CGATGATGATGTGACGAATGTCCGGGCCAGCCGCGCGGCGTGGCACGTTTTTAATGCGTGTGACGGTGCC  >  NC_000913/2896744‑2896888

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`