| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,107,469 | +C | intergenic (‑296/‑101) | b2965 ← / → yqgA | ornithine decarboxylase isozyme/putative transport protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,107,469 | 1 | . | C | 98.8% | 452.6 / ‑0.8 | 169 | intergenic (‑296/‑101) | b2965/yqgA | ornithine decarboxylase isozyme/putative transport protein |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base C (81/86); total (83/86) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.40e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 | |||||||||||
Only 100 of 177 total aligned reads displayed.
GAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTT‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGA > NC_000913/3107394‑3107538 | gagaAAGTAAGGAGAGGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑ttt < 2:380969/76‑1 (MQ=255) agaATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑tttc > 2:401770/1‑75 (MQ=255) agaATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑tttc > 2:3189758/1‑75 (MQ=255) aaTGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑tttcgc > 2:2720495/1‑73 (MQ=255) aGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGc < 1:1422885/76‑1 (MQ=255) aGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGc < 2:2764215/76‑1 (MQ=255) ggAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCg > 1:1999752/1‑76 (MQ=255) gaTGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCCTGc > 2:4422811/1‑76 (MQ=255) tGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCaa < 2:770119/76‑1 (MQ=255) tGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCaa < 1:2223835/76‑1 (MQ=255) tGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCaa < 1:35530/76‑1 (MQ=255) tGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCaa > 1:3328715/1‑76 (MQ=255) tGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCaa < 1:2500196/76‑1 (MQ=255) ggCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAg > 1:3303219/1‑76 (MQ=255) gTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCa > 2:1883079/1‑76 (MQ=255) gTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCa < 2:1845047/76‑1 (MQ=255) gTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCa > 1:2729445/1‑76 (MQ=255) gTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGCGCAAGCCa > 2:4713163/1‑76 (MQ=255) gCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAgg < 1:968887/76‑1 (MQ=255) gCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAgg > 1:3252808/1‑76 (MQ=255) aTCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGAc > 1:1152568/1‑76 (MQ=255) aTCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGAc > 1:3903650/1‑76 (MQ=255) aTCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGAc > 1:2768044/1‑76 (MQ=255) aTCGGACAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGAc > 1:2965161/1‑76 (MQ=255) gggCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACttt > 1:3159706/1‑76 (MQ=255) ggCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCGCC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTg < 2:520307/76‑1 (MQ=255) ggCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTg > 2:4773468/1‑76 (MQ=255) gccAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTg > 1:3946911/3‑76 (MQ=255) gCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGc < 1:2518658/76‑1 (MQ=255) cAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTCAAGCGTGCAAGCCAGGACTTTGct > 1:3983711/1‑75 (MQ=255) cAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCg > 1:3972577/1‑76 (MQ=255) aaaCTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGa > 2:3500835/1‑76 (MQ=255) aaaCTCAGTACAGAGAGCAGAAAATGCGCGAAATCACGGCACCGGTA‑GATAAAGCACGCAAGCCAGGACGTTGcta > 1:1667708/1‑74 (MQ=255) aaCTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaa > 1:550325/1‑76 (MQ=255) gTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaacaaaca < 2:487707/76‑1 (MQ=255) gTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaacaaaca > 2:4794411/1‑76 (MQ=255) gTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGaacaaaca > 2:3524034/1‑76 (MQ=255) tACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAacaaacaa > 2:649763/1‑76 (MQ=255) aCAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAacaaacaac > 1:365994/1‑75 (MQ=255) aCAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAg < 1:4123378/76‑1 (MQ=255) cAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGc > 1:3530256/1‑76 (MQ=255) agagagGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGcc > 1:3369980/1‑76 (MQ=255) agagagGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGcc < 2:2124905/76‑1 (MQ=255) gagagGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCa > 2:1488437/1‑76 (MQ=255) agagGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCAt > 1:3418287/1‑76 (MQ=255) agagGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCAt < 2:4042283/76‑1 (MQ=255) agagGAGAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCAt < 2:1088939/76‑1 (MQ=255) agagGAAAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCAt < 1:786789/76‑1 (MQ=255) gaggagAAAATTCGCGCAATCATGGCACCGTTC‑GCTAAAGCTTGCAAGCTAGGACATTGCGAACAAACAAGCCATc > 1:1370602/1‑76 (MQ=255) gaggagAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATc < 2:2768044/76‑1 (MQ=255) gaggagAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATc < 2:922020/76‑1 (MQ=255) aggagAAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATca > 1:2582258/1‑75 (MQ=255) gagaAAATTCTCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGAc > 2:1932067/1‑76 (MQ=255) gagaAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGAc < 1:3061841/76‑1 (MQ=255) aaaaaaaTCCGCGCAATCATGGCGCC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACCATCAAGCCATCGAc < 1:60853/73‑1 (MQ=255) agaAAATTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACg < 1:1501563/76‑1 (MQ=255) gaAAATTCGCGCAATCATGGCACC‑TTGCGCTAAAGTGGGCAAGCCAGGACTGGGCGAACAAACAAGCCATCGACgg < 1:4183345/76‑1 (MQ=255) aaaaTTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGc < 2:1786309/76‑1 (MQ=255) aaaaTTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGc > 2:4158891/1‑76 (MQ=255) aaaaTTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGc > 2:694930/1‑76 (MQ=255) aaaaTTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGc < 1:2423442/76‑1 (MQ=255) aaaaTTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGc > 1:3600856/1‑76 (MQ=255) aaaTTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCa < 1:4160670/76‑1 (MQ=255) aaaTTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCa > 1:2374405/1‑76 (MQ=255) aaTTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCAc < 1:1656799/76‑1 (MQ=255) aaTTCGCGCAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCAc < 1:3696897/76‑1 (MQ=255) gcgcAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAAc < 2:4558353/76‑1 (MQ=255) gcgcAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAAc < 1:4832353/76‑1 (MQ=255) gcgcAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAAc < 2:3949284/76‑1 (MQ=255) gcgcAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAAc > 1:2475597/1‑76 (MQ=255) cgcAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACg < 1:287015/76‑1 (MQ=255) cgcAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACg < 2:3337766/76‑1 (MQ=255) gcAATCATGTCACC‑TTGCGCTAAAGCGTGCAAGCCAGGACGTTGCGAACAAACAAGCCATCGACGGCACCAAACgg < 1:2270814/76‑1 (MQ=255) gcAATCATGGCGCC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACgg < 2:2292533/76‑1 (MQ=255) gcAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACgg < 1:2266557/76‑1 (MQ=255) gcAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACgg > 2:2599880/1‑76 (MQ=255) gcAATCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACgg < 1:3980720/76‑1 (MQ=255) aaTCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTc > 2:4409586/1‑76 (MQ=255) aTCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAGCAAGCCATCGACGGCACCAAACGGTCa < 2:4490262/76‑1 (MQ=255) aTCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCa < 2:3252808/76‑1 (MQ=255) tCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCat < 1:1529081/76‑1 (MQ=255) tCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCat < 1:3126954/76‑1 (MQ=255) tCATGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCat < 1:2187494/76‑1 (MQ=255) aTGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCataa > 2:4372417/1‑76 (MQ=255) aTGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCataa < 1:1193308/76‑1 (MQ=255) aTGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCataa < 2:1086949/76‑1 (MQ=255) tGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGGCGGCACCAAACGGTCataat > 1:2854070/1‑76 (MQ=255) tGGCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCataat > 1:4345817/1‑76 (MQ=255) tGGCACC‑TTTCGCTAAAGCGTGCAACCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCataat > 2:2410540/1‑76 (MQ=255) ggCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCataata < 2:1994597/76‑1 (MQ=255) ggCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCataata > 2:1689574/1‑76 (MQ=255) ggCACC‑TTTCGCGAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCataata < 1:1308442/76‑1 (MQ=255) tcACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGAACCAAACGGTCataatca > 1:2656094/2‑74 (MQ=255) gCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACCACCCATCGACGGCACCAAACGGTCAaaaaaa > 2:143047/1‑76 (MQ=255) gCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCAtaataa > 2:1532371/1‑76 (MQ=255) gCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCAtaataa > 1:2625563/1‑76 (MQ=255) gCACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCAtaataa > 1:1422048/1‑76 (MQ=255) cACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAg > 2:1244567/1‑76 (MQ=255) cACC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAg > 1:3193723/1‑76 (MQ=255) aCC‑TTTCGCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCCCCAAACGGTCATAATAAGa > 2:851147/1‑76 (MQ=255) | GAGAATGTAAGGAGATGGCGTGCATCGGGCAAACTCCGTACAGAGAGGAGAAAATTCGCGCAATCATGGCACC‑TTT‑GCTAAAGCGTGCAAGCCAGGACTTTGCGAACAAACAAGCCATCGACGGCACCAAACGGTCATAATAAGA > NC_000913/3107394‑3107538 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |