| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,236,735 | +C | coding (514/966 nt) | ygjT → | putative transport protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,236,734 | 1 | . | C | 98.1% | 415.8 / 1.4 | 160 | coding (513/966 nt) | ygjT | putative transport protein |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base C (76/80); total (78/82) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.16e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
Only 100 of 174 total aligned reads displayed.
CTTCGGTGCCTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAG‑C‑GCTGGTGCGCTGGCTACGCGGTTCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAG > NC_000913/3236659‑3236809 | cTTCGGTGCCTTCCTGCTGTTTACCTGCGTGAAGATGGCGCTCTCCCATGAAGATGAATCAGGCATTGGCGACAAg < 2:566441/76‑1 (MQ=255) ttCGGTGCCTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAg‑c > 1:813503/1‑76 (MQ=255) tCGGTGCCTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAg‑cc < 2:2859610/76‑2 (MQ=255) tCGGTGCCTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAg‑cc < 2:1042021/76‑2 (MQ=255) cGGTGCCTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAg‑ccg > 1:41956/1‑74 (MQ=255) cGGTGCCTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAg‑ccg > 1:4565646/1‑74 (MQ=255) ggTGCCTTCCTGCTGTTTACCGGCGTGACGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAg‑ccgc < 1:45557/76‑4 (MQ=255) ggTGCCTGCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAg‑ccgc < 2:4452245/76‑4 (MQ=255) ccTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTggg > 1:3980115/1‑75 (MQ=255) ccTTCCTGCTGTGTGCCGGAGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGt < 1:407373/76‑1 (MQ=255) cTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTg < 2:914407/76‑1 (MQ=255) cTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTg > 2:1441138/1‑76 (MQ=255) tCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTgcg < 1:3528921/76‑1 (MQ=255) ccTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTgcgc < 2:4088406/76‑1 (MQ=255) ccTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTgcgc < 1:2275997/76‑1 (MQ=255) ccTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGGgcgc > 2:1413864/1‑76 (MQ=255) ctgttgTTTACCGGCGTGAAGATGGCGCTCGGCCATGCAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTgcgcg < 2:4709689/76‑2 (MQ=255) ctgctgTTTCCCTGCGTGAAGATGGCGCTCGCCCATGAAGATGCACCAGGCATTGGGGACCAGCC‑GCTGGTGCGCt < 2:965899/76‑1 (MQ=255) tgctgTTTAGCGGCGTGAAGATGGCGCGCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTg < 2:2707803/76‑1 (MQ=255) gctgTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTgg > 2:3019827/1‑76 (MQ=255) gTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTa < 2:3645487/76‑1 (MQ=255) tttACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTAc < 2:4791118/76‑1 (MQ=255) ttACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTCCGCCGGCTCcg > 2:1324002/1‑76 (MQ=255) ttACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCGGGGGCGCTGGCCAcc > 2:36059/1‑75 (MQ=255) tACCGGCGTGAAGATGGCGCTCGCCCTTGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTAcgc < 2:3037253/76‑1 (MQ=255) gccGGCGTGAAGATGGCGCGCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTAcgcg < 2:3702211/75‑1 (MQ=255) aCCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCTCTGGCTAcgcg > 2:2754721/1‑76 (MQ=255) aCCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTAcgcg > 1:2575555/1‑76 (MQ=255) aCCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTAcgcg > 2:4361284/1‑76 (MQ=255) ccGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCgg > 2:3368027/1‑76 (MQ=255) ccGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCgg > 1:4471994/1‑76 (MQ=255) gCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGGtca > 1:4046648/1‑74 (MQ=255) cGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGGtcat > 1:3627237/1‑73 (MQ=255) cGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAG‑CTGCTGGTGCGCTGGCTACGCGGtcat > 1:1409352/1‑73 (MQ=255) tGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCAttt > 1:3715579/1‑76 (MQ=255) aaGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTCCGCGG‑TCATTTgc < 1:1903914/76‑1 (MQ=255) aaGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTgc > 1:2041753/1‑76 (MQ=255) aaGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAG‑CAGCTGGTGCGCTGGCTACGCGG‑GCATTTgc > 2:1576031/1‑76 (MQ=255) aGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCCG‑TCATTTgcg > 2:3131142/1‑76 (MQ=255) gATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTgcgc < 1:2662491/76‑1 (MQ=255) gATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTgcgc > 1:1753838/1‑76 (MQ=255) gATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTgcgc < 1:210152/76‑1 (MQ=255) aTGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCa < 1:2651306/76‑1 (MQ=255) aTGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCa < 1:3771932/76‑1 (MQ=255) aTGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑GCATTTGAGCa > 1:4186368/1‑76 (MQ=255) tGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCAt < 1:4391231/76‑1 (MQ=255) ggCGCTCGCCCATGAAGAGGAATCATGCGTTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATg < 2:1129263/76‑1 (MQ=255) gcgcTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGa < 1:1051715/76‑1 (MQ=255) gcgcTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGa > 2:2877480/1‑76 (MQ=255) gcgcTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGa > 1:3645467/1‑76 (MQ=255) gcTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATggcc > 1:3866677/1‑73 (MQ=255) gcTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGAcc > 1:4641139/1‑76 (MQ=255) gcTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGAcc > 2:1884240/1‑76 (MQ=255) cTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCg > 2:2788740/1‑76 (MQ=255) cTCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCg > 1:3726420/1‑76 (MQ=255) tCGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGa > 1:2886789/1‑76 (MQ=255) cGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGac > 1:2123703/1‑76 (MQ=255) cGCCCATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGac > 1:4768170/1‑76 (MQ=255) ccccATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGaca < 1:2163579/75‑1 (MQ=255) cccATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGacac > 1:2999808/1‑76 (MQ=255) ccATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACAcc > 1:430434/1‑76 (MQ=255) ccATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCCAATGACCGACAcc > 1:1066215/1‑76 (MQ=255) ctggAAGATGAAGCGGGCGTGGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCa < 2:4563299/73‑1 (MQ=255) cATGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCa > 2:3493161/1‑76 (MQ=255) aTGAAGATGGATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑GCATTTGCGCCTGACCGACACCAt > 1:1301268/1‑76 (MQ=255) aTGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCCGGCTACGCGG‑ACATATGCGCCTGACGCGCACCAt > 1:1773412/1‑76 (MQ=255) tGAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATc < 1:2344024/76‑1 (MQ=255) ggAAGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATc < 2:4336260/75‑1 (MQ=255) gAAGATGAATCAGGCATTGGCGAAAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCg < 1:824565/76‑1 (MQ=255) aaGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCgc > 2:785727/1‑75 (MQ=255) aaGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGa < 1:2792237/76‑1 (MQ=255) aaGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGa > 1:3804116/1‑76 (MQ=255) aaGATGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGa < 1:3380391/76‑1 (MQ=255) aaGATGAATCAGGCATCGGCGACAAGCC‑GATCGTGCGCTGGCTACGCGG‑TCATTTGCGCACGACCGACACCATCGa > 2:1615506/1‑76 (MQ=255) gggtGAAGCAGGGATGGGGGACAAGCC‑GGTGGTGGGGTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGAc < 2:23224/73‑1 (MQ=255) aGATGAATCAGGCATGGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGAc < 1:3113293/76‑1 (MQ=255) aGATGAATCAGGCATGGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGAc < 1:3015704/76‑1 (MQ=255) gATAAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACa < 1:520827/76‑1 (MQ=255) aTGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACaa < 1:471252/76‑1 (MQ=255) tGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACCAc > 1:239575/1‑76 (MQ=255) tGAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAAc < 1:2370795/76‑1 (MQ=255) taaTCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACg < 1:1594159/75‑1 (MQ=255) gAATCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACg < 1:2747696/76‑1 (MQ=255) aaTCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGa > 2:2074453/1‑76 (MQ=255) aTCGGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAg < 2:2454815/76‑1 (MQ=255) aTCAGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAg < 2:2081503/76‑1 (MQ=255) aGGCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCAt > 1:798982/1‑76 (MQ=255) ggCATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCAtt > 1:3163947/1‑76 (MQ=255) cATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTc > 2:1583476/1‑76 (MQ=255) cATTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTc > 1:2793724/1‑76 (MQ=255) cttGCCGAAAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCt < 1:1374878/75‑1 (MQ=255) aTTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCt > 2:3155489/1‑76 (MQ=255) aTTGGCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCt < 1:3062883/76‑1 (MQ=255) gCGACACGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTtgt < 1:4158873/76‑1 (MQ=255) gCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGCCACCATCCCCAACGCGCATTTTTTtgt > 2:4553221/1‑76 (MQ=255) gCGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCCTCGCCAACGAGCCTtttttttt > 2:72985/1‑74 (MQ=255) cGACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTtgcg > 1:3093731/1‑74 (MQ=255) cGACAAGCC‑GCTGGTGCGCGGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTtgtg < 2:1843711/76‑1 (MQ=255) gACAAGCC‑GCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGc < 1:1725908/76‑1 (MQ=255) aCAAG‑CGGCTGGTGCGCTGGCTACGCGG‑TCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCg < 1:2705220/76‑1 (MQ=255) | CTTCGGTGCCTTCCTGCTGTTTACCGGCGTGAAGATGGCGCTCGCCCATGAAGATGAATCAGGCATTGGCGACAAG‑C‑GCTGGTGCGCTGGCTACGCGGTTCATTTGCGCATGACCGACACCATCGACAACGAGCATTTCTTTGTGCGTAAG > NC_000913/3236659‑3236809 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |