| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,237,242 | +C | intergenic (+55/‑342) | ygjT → / → ygjU | putative transport protein/putative transport protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,237,240 | 1 | . | C | 98.9% | 236.7 / ‑3.5 | 91 | intergenic (+53/‑344) | ygjT/ygjU | putative transport protein/putative transport protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (38/52); total (38/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
Only 100 of 111 total aligned reads displayed.
ATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCT‑CC‑TCT‑CCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCAC > NC_000913/3237165‑3237309 | gATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGTCGTGTACCCTGTCATTAACATGAGCACCTTTTtct‑cg < 2:3333275/76‑2 (MQ=255) gATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTtct‑cc > 1:2183544/1‑76 (MQ=255) aTAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTtct‑ccc < 2:3626006/76‑2 (MQ=255) aTAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTtct‑ccc > 2:2855101/1‑75 (MQ=255) tAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTtct‑ccct < 1:2339089/76‑3 (MQ=255) tAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTtct‑ccct < 1:2980014/76‑3 (MQ=255) aaGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTtct‑ccctc < 1:3939883/76‑4 (MQ=255) aaGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTtct‑ccctc < 1:487483/76‑4 (MQ=255) cagcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccc‑tct‑cc < 1:1851548/76‑1 (MQ=255) cagcGGGGGTGATAATGTGTAATCTGCCGAAGCCGTGGACCCGGTCATTAACATGAGCACCGTTGTctccc‑tct‑cc < 1:1887439/76‑1 (MQ=255) agcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccc‑tct‑ccc < 1:1147583/76‑2 (MQ=255) gcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccc‑tct‑ccct < 2:2076905/76‑3 (MQ=255) gcGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccc‑tct‑ccct < 2:2358153/76‑3 (MQ=255) cGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccc‑tct‑ccctt < 2:3045621/76‑4 (MQ=255) cGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTctccc‑tct‑ccctt > 1:1785084/1‑73 (MQ=255) ggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCa < 2:1514000/76‑1 (MQ=255) ggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCa > 1:4675955/1‑76 (MQ=255) ggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCa < 1:2930129/76‑1 (MQ=255) ggTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCAGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCa < 2:3907927/76‑1 (MQ=255) gTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑g < 2:259481/76‑1 (MQ=255) gTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑g < 1:3780003/76‑1 (MQ=255) tGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑gg < 2:1974826/76‑1 (MQ=255) tGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑gg > 1:1478133/1‑76 (MQ=255) gggATAATTTTTAATCTGACGCAGCCGTGTACCCTGTCATTCACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑gg > 2:2885410/2‑76 (MQ=255) ggATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑ggg < 2:4312522/76‑1 (MQ=255) gATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGga > 2:2685809/1‑76 (MQ=255) gATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGga > 2:3348672/1‑76 (MQ=255) gATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGga < 1:3233844/76‑1 (MQ=255) gATAATTTTTAATCTGACTAAGCAGTTTACCCTTGCATTAACAGGAGCACCGTTGTCG‑CCATCTCCCTTCCA‑GGga < 1:3247695/76‑1 (MQ=255) aTAATTTTTAATCTGCCTCAGCCGTGTCCCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGgag < 1:3385219/76‑1 (MQ=255) aTAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGgag < 2:4810609/76‑1 (MQ=255) aTAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGgag > 1:112130/1‑76 (MQ=255) tAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGgaga < 1:2690184/76‑1 (MQ=255) aaTTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGagag > 2:2859994/1‑76 (MQ=255) aaTTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGagag > 2:1851839/1‑76 (MQ=255) aaTTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGagag > 2:4421077/1‑76 (MQ=255) aTTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAgg < 1:4328935/76‑1 (MQ=255) ttttAATCTGCCTACTCCGTGTACCCTATCCTTGACATGCGCACCTTATGCTCCC‑TCTCCCTTCCC‑GGGAGAggat < 1:1326575/76‑3 (MQ=255) ttttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGt < 2:1355735/76‑1 (MQ=255) tttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTc < 1:3893859/76‑1 (MQ=255) tttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTc > 2:2573392/1‑76 (MQ=255) tttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTc < 1:4070033/76‑1 (MQ=255) tttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTc < 2:3172674/76‑1 (MQ=255) ttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCg < 1:2998169/76‑1 (MQ=255) ttAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCg > 2:3979284/1‑76 (MQ=255) tAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCgg > 1:3179436/1‑76 (MQ=255) tAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCgg > 1:2640937/1‑76 (MQ=255) tAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCgg < 2:2391067/76‑1 (MQ=255) tAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCgg < 1:1787874/76‑1 (MQ=255) aaTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCggg < 2:1528955/76‑1 (MQ=255) aTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCgggg > 2:4360514/1‑76 (MQ=255) aTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCgggg < 1:2175966/76‑1 (MQ=255) aTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCgggg < 2:2576396/76‑1 (MQ=255) aTCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCgggg < 1:2163736/76‑1 (MQ=255) aTCTGCCTAAGCCGTGTACCCTGGCATTAACATGCGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGCGGGTCggcg > 2:4378744/1‑74 (MQ=255) tCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGt < 1:499007/76‑1 (MQ=255) tCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGt < 1:1086741/76‑1 (MQ=255) tCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGt < 2:4235517/76‑1 (MQ=255) cTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTg < 1:1542978/76‑1 (MQ=255) cTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTg < 1:1159578/76‑1 (MQ=255) cTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑CCTCCCTTCCA‑GGGAGAGGGTCGGGGTg < 1:2648924/76‑1 (MQ=255) tGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑TGGAGAGGGTCGGGGTGa > 1:2787450/1‑76 (MQ=255) ccTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAgg > 1:3981752/1‑76 (MQ=38) tAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGt < 2:389892/76‑1 (MQ=37) tAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGt < 1:4646553/76‑1 (MQ=37) aaGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTa > 2:2991884/1‑76 (MQ=37) aGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTaa > 1:4292707/1‑76 (MQ=37) gCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAAt > 2:1315855/1‑76 (MQ=37) ccGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAAtt > 1:3538669/1‑76 (MQ=37) cGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAAttt > 1:2844390/1‑76 (MQ=37) cGTGTACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAAttt < 1:3122003/76‑1 (MQ=37) tgtACCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAAttttt > 2:378576/1‑76 (MQ=25) gtgcccTGTGATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTc < 2:4590797/73‑1 (MQ=25) aCCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGCGAGGGTCGGGGTGAGGGTAATTTTTCGc > 2:4500686/1‑76 (MQ=37) aCCCTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGc > 1:3994189/1‑76 (MQ=37) cccTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCa < 1:3377544/76‑1 (MQ=37) cccTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCa < 1:4063942/76‑1 (MQ=37) cccTGTCATAAACATGACCGCCTTTTTCCCCC‑CCC‑CCCTCCGGGGGGGGGGGTGGGGGGGAGGGTAATTTTTCGCa < 2:3872589/76‑1 (MQ=255) cccGGTCATTAACATGAGCACCGTTTGCTCCC‑GCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCa < 1:4082913/76‑1 (MQ=25) cTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCAcc > 2:3218924/1‑76 (MQ=37) cTGTCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCAcc < 1:4732028/76‑1 (MQ=37) tCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGAt < 1:3702453/76‑1 (MQ=37) tCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGAt > 2:4414164/1‑76 (MQ=37) tCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGAt < 2:3538669/76‑1 (MQ=37) tCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGAt < 1:986025/76‑1 (MQ=37) tCATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGAt < 2:3989504/76‑1 (MQ=37) tCAGTAACAGGAGCACCGTTTGCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGAt < 1:1023423/76‑1 (MQ=25) gcATTAACATGAGAAACGTGGTCTCCC‑TCGCCCTGCCA‑GGGAGAGGGGCGGGGTGAGGGTAAGTTTTCGCACCGAt < 1:1023321/75‑1 (MQ=9) cATTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATg > 1:1735454/1‑76 (MQ=37) aTTAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGc > 2:4594975/1‑76 (MQ=37) ttAACATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCt < 1:1569186/76‑1 (MQ=37) aaCATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTgg > 1:2816568/1‑76 (MQ=37) aCATGAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGc > 2:1911591/1‑76 (MQ=37) aTGAGCTCCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGTGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCt < 2:2097372/76‑1 (MQ=25) taGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCTGGGTGAGGGTAATTTTTCCGCCCCATGCCGGCCCGt > 2:1444421/2‑76 (MQ=16) gAGCACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGt > 2:1726671/1‑76 (MQ=37) cACCGTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTcc > 1:4469579/1‑76 (MQ=25) ctttttCTCCC‑TCTCCCTTCGG‑GGGGGGGGGTGGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCt < 1:3953450/74‑1 (MQ=19) gTTTTCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGCCCTGTTCCCCTc > 2:1652431/1‑76 (MQ=25) tttCTCCC‑TCTCCCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCAc > 1:3916759/1‑76 (MQ=25) | ATGATAAGCAGCGGGGTGGATAATTTTTAATCTGCCTAAGCCGTGTACCCTGTCATTAACATGAGCACCGTTTTCT‑CC‑TCT‑CCTTCCA‑GGGAGAGGGTCGGGGTGAGGGTAATTTTTCGCACCGATGCTGGCCTGTTCCCCTCAC > NC_000913/3237165‑3237309 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |