| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,418,840 | +G | coding (1070/1089 nt) | b3269 → | putative transport system permease protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,418,837 | 1 | . | G | 98.1% | 274.1 / ‑1.4 | 105 | coding (1067/1089 nt) | b3269 | putative transport system permease protein |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base G (56/47); total (57/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 116 total aligned reads displayed.
AAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑C‑GGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGC > NC_000913/3418762‑3418907 | aaaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑c < 1:3936196/76‑1 (MQ=255) aaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑C‑g < 1:3976969/76‑1 (MQ=255) aaaCTCCTCTCTTCCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑C‑g < 2:1433749/76‑1 (MQ=255) aCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑C‑ggg < 2:3059214/76‑1 (MQ=255) aCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑C‑ggg < 2:2894807/76‑1 (MQ=255) tcctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑C‑ggggc < 1:2716957/76‑3 (MQ=255) cctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACC‑GGGCa > 2:3646570/1‑76 (MQ=255) cctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑C‑ggggca < 1:3330966/76‑4 (MQ=255) cctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑C‑ggggca < 2:3003414/76‑4 (MQ=255) ctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑Gc < 1:735530/76‑1 (MQ=255) ctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑Gc > 1:1976623/1‑76 (MQ=255) ctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCa < 1:3327557/76‑1 (MQ=255) ttGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCAt > 2:2957993/1‑76 (MQ=255) ttGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCAt > 1:3327879/1‑76 (MQ=255) ttGCCCCCGCTATGGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCCCCGTGCTGAATCAGC‑CGGGGCAA‑GCCAt < 1:607020/76‑1 (MQ=255) tGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATc > 2:3250040/1‑76 (MQ=255) gccgccGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCg > 1:4538564/1‑76 (MQ=255) ccgccgCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCga < 1:4705581/76‑1 (MQ=255) ccgccgCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCga < 1:4115197/76‑1 (MQ=255) ccgccgCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCga < 2:2667094/76‑1 (MQ=255) cgcggcTATTGGATGTCCCGATGTGGTTTCGCTGTTTGCGGGCATCGTGCTGAATGAGA‑CGGGGCAC‑GCCATCggg < 2:842904/76‑3 (MQ=255) gccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCCCCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCgaga > 2:3369226/1‑76 (MQ=255) gccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCACCgaga > 2:2482802/1‑76 (MQ=255) ccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGAc > 1:3192357/1‑76 (MQ=255) ccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGAc > 1:1113656/1‑76 (MQ=255) ccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGAc < 2:4157532/76‑1 (MQ=255) ccgcTATTGGCGATCCCGATATGGTTTCGCTGTTTGCCGGCACCGGGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGAc < 2:4452220/76‑1 (MQ=255) cgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACg > 1:3141729/1‑76 (MQ=255) cgcCATTGGCTACCCCGACATGGTTTCGCTGTTTGCCGGCCCCGAGCTGAATCAGC‑CGGGGCAA‑GCCACCGAGACg < 1:1153552/76‑1 (MQ=255) gcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCCCCGTGCTGAATCAGA‑CGGGGCAA‑GCCCTCGAGACGa > 2:3418788/1‑76 (MQ=255) gcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGa < 1:1301446/76‑1 (MQ=255) gcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGa < 1:966795/76‑1 (MQ=255) tATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATa > 1:1626827/1‑76 (MQ=255) tATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATa < 1:3770515/76‑1 (MQ=255) ttGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGc > 1:4411555/1‑76 (MQ=255) ttGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGc > 1:1974530/1‑76 (MQ=255) tGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGCCGATAccc > 2:731352/1‑76 (MQ=255) tGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGcc < 1:933759/76‑1 (MQ=255) tGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGcc < 1:2429143/76‑1 (MQ=255) tGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGcc > 1:4163892/1‑76 (MQ=255) tATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGa < 1:2787706/76‑1 (MQ=255) tATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGa > 2:592337/1‑76 (MQ=255) aTCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGAc > 1:2236640/1‑76 (MQ=255) tCCCGATATGTTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGAcc < 1:1846333/76‑1 (MQ=255) tCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCCTGAcc > 2:4255969/1‑76 (MQ=255) tCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGAcc < 1:3397802/76‑1 (MQ=255) cccGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCa > 1:4814623/1‑76 (MQ=255) ccGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCAt > 1:88350/1‑76 (MQ=255) ccGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATACCCATGcccct > 2:4536588/1‑74 (MQ=255) cGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGTTAGCCATGACCATg > 1:4817051/1‑76 (MQ=255) cGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATg > 2:4729720/1‑76 (MQ=255) gATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGt > 1:2663102/1‑76 (MQ=255) atatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTc < 2:2437963/76‑1 (MQ=255) atatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTc > 1:2477877/1‑76 (MQ=255) tGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGt > 2:1182274/1‑76 (MQ=255) tGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGt > 2:3105218/1‑76 (MQ=255) ggTTGCGCTGTTTGCCGGCCCCGTGCGGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTc < 1:3747643/76‑1 (MQ=255) tttCGTGGTTGGCGGGCACCGGGCTGAATCGGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTa < 2:568097/76‑1 (MQ=255) tttCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTa > 1:4308768/1‑76 (MQ=255) tttCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTa < 2:4369604/76‑1 (MQ=255) ttCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTAt > 1:515195/1‑76 (MQ=255) cGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCt < 1:4708197/76‑1 (MQ=255) gCTGTTTGCCGGCACCGGGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTGCGTCTATCTg > 1:4104296/1‑76 (MQ=255) ccTGTTTGCCGGCACCGTGCTGACTCAGA‑CGGGGCAA‑GCCATCGAGCCGATAGCCCAGACCATTTCTGGCTATCtt > 2:4872602/2‑75 (MQ=255) cTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGa > 1:3528333/1‑76 (MQ=255) cTGTTTGCCGGCACCGCGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCACGACCCTGTCGGTCTATCTGa > 2:705814/1‑76 (MQ=255) tGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt < 2:2203027/76‑1 (MQ=255) tGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt > 2:1384348/1‑76 (MQ=255) tGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt > 1:2253071/1‑76 (MQ=255) ttttGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAtt < 1:4396006/75‑1 (MQ=255) gTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAtt > 2:3176029/1‑76 (MQ=255) tttGCCCACACCGTGCTGAAGCAGA‑CGGGGCAA‑GCCACCGAGACGATAGCCACGCCCATGAAGGTCTATCTGATTa > 2:2988762/1‑76 (MQ=255) ntGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGATACGATAGCCATGACCATGTCGGTCTATCTGATTAt > 1:3537651/2‑76 (MQ=255) tGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATc > 1:2840213/1‑76 (MQ=255) tGCCGGCACCGGGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATc < 1:3590275/76‑1 (MQ=255) gCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCa < 1:1323925/76‑1 (MQ=255) gCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCa > 1:1507830/1‑76 (MQ=255) ccGCCACCGTGCTAAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAg < 1:4819027/76‑1 (MQ=255) cGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTCTCTGATTATCAGc > 2:4852195/1‑76 (MQ=255) cGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGc > 1:4417546/1‑76 (MQ=255) ggCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGcc > 2:4265277/1‑76 (MQ=255) ggCACCGTGCTGAATAAGA‑CGGGGCAG‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGcc < 2:4167608/76‑1 (MQ=255) cccGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGa < 1:124193/75‑1 (MQ=255) aCCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTgc > 2:4660020/1‑75 (MQ=255) aCCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGa > 1:4441586/1‑76 (MQ=255) cGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACt < 2:1507829/76‑1 (MQ=255) gTGCTGAATCAGA‑G‑GGGGAACGCCATCGAGACGATAGCCATGACCATGTCGGTCNATCTGATTATCAGCCTGACTa < 1:2074386/76‑1 (MQ=255) tGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAt < 1:940613/76‑1 (MQ=255) tGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAt > 2:4581967/1‑76 (MQ=255) gCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtc < 2:3557662/76‑1 (MQ=255) cTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtct < 1:3359639/76‑1 (MQ=255) gAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGGCTATCTCg < 2:2490915/76‑1 (MQ=255) gAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCg > 2:4619511/1‑76 (MQ=255) gAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCg > 1:3492534/1‑76 (MQ=255) aaTCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgc > 2:2020757/1‑76 (MQ=255) agcAGA‑CGGGGGAA‑GCCCTCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgct < 2:3706887/74‑1 (MQ=255) aNCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgct < 2:3277264/76‑1 (MQ=255) tCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgctg < 1:4375713/76‑1 (MQ=255) cAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgctgc > 2:1392466/1‑76 (MQ=255) cAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgctgc < 1:731352/76‑1 (MQ=255) | AAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑C‑GGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGC > NC_000913/3418762‑3418907 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |