| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,430,453 | +C | coding (745/747 nt) | smf ← | putative Rossmann‑fold nucleotide‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,430,453 | 1 | . | C | 98.9% | 238.8 / ‑4.3 | 92 | coding (745/747 nt) | smf | putative Rossmann‑fold nucleotide‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (56/35); total (57/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 101 total aligned reads displayed.
TCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGG‑AAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTC > NC_000913/3430379‑3430522 | tCACAAGAATCGCACCTTGTTTTATTAGCCGGTGAGGCGCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAggc < 2:2624188/76‑2 (MQ=255)tCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAggc > 2:1054986/1‑75 (MQ=255) acaAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAggcaa < 2:2708590/76‑4 (MQ=255) acaAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAggcaa < 1:3523867/76‑4 (MQ=255) aaGAATCGCACCTTGTTTTATTAACCAGTGACGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGG‑caaaa > 2:132812/1‑76 (MQ=255) aGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGG‑caaaaa < 2:4021323/76‑2 (MQ=255) gAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAAc < 1:2766810/76‑1 (MQ=255) aaTCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACt > 1:2048509/1‑76 (MQ=255) aTCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACtt < 1:3361330/76‑1 (MQ=255) aTCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACtt > 1:2434211/1‑76 (MQ=255) cGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTtcc > 2:1447051/1‑75 (MQ=255) gCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTtctc > 1:4837703/1‑76 (MQ=255) ccTTGTTTTCTTAACCAGTGAGGCCCTTCGCTTCCCCGATTGCCTATTTGTCCTGT‑CACGGCAAAAGCGTCTCGcc > 1:534619/1‑76 (MQ=255) ccTTGTTTTATTAACCAGTGAGTCCGTTCGCTTCCCTGACTCCCTATTGGACCTGG‑CAAGGCCAAAAGTTCTCGcc < 1:2778647/76‑1 (MQ=255) ccTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGcc > 1:533755/1‑76 (MQ=255) ccTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCACGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGcc > 2:2702143/1‑76 (MQ=255) cTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGccc < 1:2117180/76‑1 (MQ=255) cTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGccc < 1:2092389/76‑1 (MQ=255) tGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCt < 1:2629658/76‑1 (MQ=255) ttttATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGc > 2:4272134/1‑76 (MQ=255) tttATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGcc > 2:4112666/1‑75 (MQ=255) tattaACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCa > 2:3318795/1‑76 (MQ=255) tattaACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCa > 2:378812/1‑76 (MQ=255) ttaACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAg > 1:1051710/1‑76 (MQ=255) taACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAACCTTCTCGCCCCTGCTCAAgc > 2:4547385/1‑76 (MQ=255) taACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAgc < 1:4484163/76‑1 (MQ=255) taACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAgc > 1:4547740/1‑76 (MQ=255) aaCCCGTGAGGCCCTGCGCTTCCCTGATTCCCTATTGGACCTGG‑CACGGCAAAAACTTCTCGCCCCTGCTCAAgct < 2:482158/76‑2 (MQ=255) aaCCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAgcg > 1:2624022/1‑76 (MQ=255) aCCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCGCGCCCCTGCTCAAgcgc < 2:2921500/76‑1 (MQ=255) ccAGTGAGGCCATTCGCTTCCCGGATTCCCTATTGGACCTCG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGca > 1:530899/1‑76 (MQ=255) cAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGcac > 2:2933387/1‑76 (MQ=255) cAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGcac > 1:482662/1‑76 (MQ=255) aGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGcaca < 2:2888613/76‑1 (MQ=255) aGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGcaca > 1:1850722/1‑76 (MQ=255) aGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGcaca < 1:173621/76‑1 (MQ=255) aGTGAGGCCCTTCGCTTCCAGGATTCCCCATTGGACCTCG‑CAAGGCAAAAACCTCTCGCCCCTGCTCAAGCGcaca > 2:4256182/1‑76 (MQ=255) gTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACaa < 2:236792/76‑1 (MQ=255) tGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAAc > 2:3253194/1‑76 (MQ=255) tGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAAc > 2:2909060/1‑76 (MQ=255) taGGCCCTTCGCCTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAACAACTTCTCGCCCCTGCTCAAGCGCACCACg > 2:866602/2‑76 (MQ=255) gAGGCCCTTCGCCTCCCGGATTCCCTATTGGACCCGGCCACGC‑AAAAACTTCTCCCCCCTGCGCAAGCGCACAAca > 2:876210/1‑75 (MQ=255) aGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGt > 2:2312479/1‑76 (MQ=255) ggCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTg > 1:441586/1‑76 (MQ=255) ggCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTg > 1:1667383/1‑76 (MQ=255) ccTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTg < 1:4811847/76‑1 (MQ=255) ccTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTg > 1:434368/1‑76 (MQ=255) ccTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGAGCTg > 1:43382/1‑76 (MQ=255) cTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAgc > 1:1017726/1‑62 (MQ=255) cTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAgc < 2:1017725/62‑1 (MQ=255) cTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGt > 1:4129090/1‑76 (MQ=255) ttCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACCACGTGCTgcc > 2:4226335/1‑74 (MQ=255) ttCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTc < 1:4156497/76‑1 (MQ=255) ttCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTc > 2:4509781/1‑76 (MQ=255) tCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCa > 1:1052453/1‑76 (MQ=255) gCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCAcc < 1:3207540/76‑1 (MQ=255) gCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCAcc > 1:4195517/1‑76 (MQ=255) gCTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCAcc > 2:1679048/1‑76 (MQ=255) cTTCCCGGATTCCCTATTGGACCTGG‑CTAGGCAAAAACTTCTCGCCCCTGCTCAAGCGTACAACGTGCTCTCACCa > 2:4855005/1‑76 (MQ=255) cTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCa > 1:183937/1‑76 (MQ=255) cTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCa < 2:1081767/76‑1 (MQ=255) cTTCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCGCGCCCCTGCGCAAGCGCACAACGTGCTGTCACCa > 2:374324/1‑76 (MQ=255) tCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCACGCGCACAACGTGCTGTCACCAGc > 2:4677298/1‑76 (MQ=255) tCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAATGTGCTGTCACCAGc > 1:4067859/1‑76 (MQ=255) tCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGc > 2:4337995/1‑76 (MQ=255) tCCCGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGc < 1:4239822/76‑1 (MQ=255) cccGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCg < 2:3069782/76‑1 (MQ=255) ccGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGa > 2:3272296/1‑76 (MQ=255) ccGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGa < 1:2933387/76‑1 (MQ=255) ccGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGa > 1:44471/1‑76 (MQ=255) ccGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGa > 1:964230/1‑76 (MQ=255) cGGATTCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGaa < 2:2299003/76‑1 (MQ=255) tCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACt > 2:2432960/1‑76 (MQ=255) tCCCTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACt < 2:3406165/76‑1 (MQ=255) cccTATTGGACCTGG‑CAAGGCAAAACCTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCAcca > 2:3685853/1‑74 (MQ=255) cccTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCCGCGAACCACTa > 2:2023407/1‑76 (MQ=255) cccTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTa > 2:3659210/1‑76 (MQ=255) ccTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTAc < 2:3839640/76‑1 (MQ=255) ccTATTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTAc > 1:1016801/1‑76 (MQ=255) ccTAGTGGACCTGG‑CAAGGCAAAAACTGCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTAc < 2:3883546/76‑1 (MQ=255) aTTGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCGGCTCAAGCGCACACCGTGCTGTCACCAGCGAACCACTACGCa < 1:4661774/76‑1 (MQ=255) ttGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCaa > 2:2719476/1‑76 (MQ=255) ttGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCaa > 1:229611/1‑76 (MQ=255) tGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCaaa > 1:2841872/1‑76 (MQ=255) tGGACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCaaa < 1:2061397/76‑1 (MQ=255) gACCTGG‑CAATGCAAAAACTTCGCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGc > 2:2173584/1‑76 (MQ=255) gACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGt > 2:1951835/1‑52 (MQ=255) gACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGt < 1:1951836/52‑1 (MQ=255) gACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGc > 1:3251339/1‑76 (MQ=255) gACCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGc < 1:594297/76‑1 (MQ=255) aCCTGG‑CAAGTCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGcc < 1:1609796/76‑1 (MQ=255) aCCTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGcc < 2:23085/76‑1 (MQ=255) ccTGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGcct < 2:2513539/76‑2 (MQ=255) tGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCt < 1:3658319/76‑1 (MQ=255) tGG‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCt > 2:1864465/1‑76 (MQ=255) gg‑caaggcaaAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCtt < 1:642934/76‑1 (MQ=255) gg‑caaggcaaAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCtt > 1:3711797/1‑76 (MQ=255) gg‑caaggcaaAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCtc > 2:3091394/1‑75 (MQ=255) g‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTc < 1:2317806/76‑1 (MQ=255) g‑CAAGGCAAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTc < 1:245500/76‑1 (MQ=255) | TCACAAGAATCGCACCTTGTTTTATTAACCAGTGAGGCCCTTCGCTTCCCGGATTCCCTATTGGACCTGG‑CAAGG‑AAAAACTTCTCGCCCCTGCTCAAGCGCACAACGTGCTGTCACCAGCGAACCACTACGCAAAGCCGCTTC > NC_000913/3430379‑3430522 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |