| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,588,794 | Δ56,260 bp | hipA–flxA | 61 genes hipA, hipB, b1509, ydeK, ydeV, ydeW, b1513, ydeY, ydeZ, b1516, yneB, b1518, b1519, b1520, uxaB, b1522, b1523, yneH, b1525, yneJ, b1527, ydeA, ydeB, marR, marA, marB, ydeD, ydeF, ydeH, ydeG, ydeI, ydeJ, dcp, ydfG, ydfH, b1541, ydfI, b1543, ydfK, b1545, ydfM, b1547, nohA, ydfO, b1550, b1551, cspI, b1553, b1554, b1555, b1556, cspB, cspF, b1559, b1560, rem, relF, relE, relB, b1565, flxA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1588794 | 1645053 | 56260 | 100 [0] | [1] 104 | hipA–flxA | hipA,hipB,b1509,ydeK,ydeV,ydeW,b1513,ydeY,ydeZ,b1516,yneB,b1518,b1519,b1520,uxaB,b1522,b1523,yneH,b1525,yneJ,b1527,ydeA,ydeB,marR,marA,marB,ydeD,ydeF,ydeH,ydeG,ydeI,ydeJ,dcp,ydfG,ydfH,b1541,ydfI,b1543,ydfK,b1545,ydfM,b1547,nohA,ydfO,b1550,b1551,cspI,b1553,b1554,b1555,b1556,cspB,cspF,b1559,b1560,rem,relF,relE,relB,b1565,flxA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1588793 | 0 (0.000) | 90 (0.710) | 70/140 | 0.3 | 99.5% | intergenic (‑233/+85) | b1506/hipA | hypothetical protein/HipA |
| ? | NC_000913 | 1645054 = | 1 (0.010) | intergenic (+293/+316) | flxA/b1568 | hypothetical protein/hypothetical protein | |||||
Only 100 of 107 total aligned reads displayed.
GTTCTTGAACCCTGAACGAATAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1588714‑1588793‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattaCGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATG > NC_000913/1645054‑1645128 GTTCTTGAACCCTGAACGAATAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATAC > 2:2968211/1‑76 TCTTGAACCCTGAACGAATAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACAT < 2:1567095/76‑1 TCTTGAACCCTGAACGAATAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACAT < 1:4155276/76‑1 TGAACCCTGAACGAATAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTAC > 2:2306132/1‑76 TGAACCCTGAACGAATAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTAC < 1:3110019/76‑1 GAACCCTGAACGAGTAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACG > 1:1239216/1‑76 GAACCCTGAACGAATAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACG > 2:1040287/1‑76 GAACCCTGAACGAATAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACG < 1:229553/76‑1 AACCCTGAACGAATAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGC > 1:3616332/1‑76 AACCCTGAACGAATAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGC < 1:2672848/76‑1 ACCCTGAACGAATAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCG > 1:1419673/1‑76 CCTGAACGAATAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCA < 1:78910/76‑1 GAACGAATAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCG < 2:3185254/76‑1 GAACGAATAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCG < 2:1774931/76‑1 AACGAATAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGC < 1:162762/76‑1 CGAATAACGACTACCAGAAAAGCACTTCGCATAACTCAGACATGATCTAACATAATATACATTACGCGCACCGCCC > 2:4137103/1‑76 GAATAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCA > 1:3797506/1‑76 AATAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATAC < 2:3014872/58‑1 AATAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATAC > 1:3014872/1‑58 TAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGAC > 2:628179/1‑76 AACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACT > 2:3569301/1‑76 AACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACT < 2:1514948/76‑1 ACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTG < 2:2967947/76‑1 CGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGA > 1:3382839/1‑76 CGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGA < 1:421572/76‑1 GACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGAC > 1:3689522/1‑76 GACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGAC > 1:789631/1‑76 GACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGAC < 1:149577/76‑1 ACTACCAGAAAAGCGCTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCTCCCCGCCCAGACTGACT < 2:472431/76‑1 CTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTC > 2:2562343/1‑76 TACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCA < 1:726403/76‑1 TACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCA < 1:518850/76‑1 TACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCA < 2:708852/76‑1 TACCAGAAAAGCACCTCGCATCACTCAGACATGAATTAACACAATATACATTACGCGCACCGCCCAGACTGACTCA > 1:1877033/1‑76 AGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGC > 2:2383997/1‑76 AGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGC < 1:697472/76‑1 AGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGC < 1:1415012/76‑1 GAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCG > 2:4730567/1‑76 GAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCG < 1:3333958/76‑1 AAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGT < 1:3266616/76‑1 AGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTC > 1:977457/1‑76 GCACTTCGCATCACTCAGACATGATTTACCATAATATCCATCACGCGCACCGCCCAGACTGACTCAGCGCGTTTCT < 1:703267/76‑1 CACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTG > 1:2597556/1‑76 ACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGG > 2:1840745/1‑76 ACTTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGG > 1:4696431/1‑76 TTCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCA < 2:1771482/76‑1 TTCGCAGCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCACGTTTCTGGCA > 2:4019759/1‑76 TCGCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCAT < 1:558027/76‑1 CGCATCACTCAGACATGATTTAACATAATATACATTACGCGCCCCGCCCAGACTGACTCAGCGCGTTTCTGGCATA < 1:2837584/76‑1 GCATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATAT > 1:1074869/1‑76 CATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATC > 1:2456408/1‑76 CATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATC < 1:4085905/76‑1 ATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCC > 1:1996705/1‑76 ATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCC > 2:4250899/1‑76 ATCACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCC < 1:3453604/76‑1 TCACTCAGACATGATTTAACATAATATACATTACGCGCACAGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCC < 2:492000/76‑1 CACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCC < 1:540641/76‑1 CACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCC < 2:3821234/76‑1 CACTCAGACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCC > 1:286510/1‑76 AGACAGGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAA < 2:1672072/76‑1 GACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAA < 1:570697/76‑1 ACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAA > 2:2750471/1‑76 ACATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAA > 2:4644880/1‑76 CATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAAC < 1:2808192/76‑1 CATGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTCTCTGGCATAGCCACGGGAAAAC > 2:3515828/1‑76 TGATTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAA < 1:4452864/76‑1 TTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTA > 1:1098582/1‑76 TTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTA > 1:1120357/1‑76 TTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTA < 1:811911/76‑1 TTTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGCAAAACAAGTA > 2:2503509/1‑76 TTAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAA < 1:1666297/76‑1 TTAACATAATATAAATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAA > 2:2905407/1‑76 TAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAC < 1:3108979/76‑1 TAACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAAC < 1:2422147/76‑1 AACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACA > 2:29710/1‑76 ACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATCTCCCCGGTAAAACAAGTAACAA > 1:2601534/1‑76 ACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAATAA > 1:3020607/1‑76 ACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAA < 2:152413/76‑1 ACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAA > 1:2575694/1‑76 ACATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAA < 2:2481833/76‑1 CATAATAGACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAA < 2:4401535/76‑1 ATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAAC > 1:67770/1‑76 ATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAAC < 1:1023914/76‑1 ATAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAAC > 1:651203/1‑76 TAATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACC > 2:1213629/1‑76 ATATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCAC > 1:992546/1‑76 TATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACC > 1:1978732/1‑76 TATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACC > 1:4164958/1‑76 ATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCC < 1:2512746/76‑1 ATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCC > 2:510614/1‑76 ATACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCC > 2:2179808/1‑76 ACATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGA > 2:3976629/1‑76 CATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAA > 1:3485515/1‑76 ATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAca > 2:1727712/1‑74 ATTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAA < 2:2913024/76‑1 TTACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAA > 1:4412154/1‑76 ACGCGCGCCGCCCAGACTGGCTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTATCAAACCACCCGAAAATG < 2:4540658/76‑1 ACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATG > 2:1740848/1‑76 ACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAA > 2:225594/1‑73 ACGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAA < 1:225594/73‑1 GTTCTTGAACCCTGAACGAATAACGACTACCAGAAAAGCACTTCGCATCACTCAGACATGATTTAACATAATATACATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1588714‑1588793‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattaCGCGCACCGCCCAGACTGACTCAGCGCGTTTCTGGCATATCCCCGGTAAAACAAGTAACAAACCACCCGAAAATG > NC_000913/1645054‑1645128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |