| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207013 = | 56 (0.410) | 48 (0.450) | 37/118 | 1.8 | 52.2% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | NC_000913 | 1208842 = | 44 (0.410) | coding (40/540 nt) | b1157 | putative tail fiber protein | |||||
Only 100 of 226 total aligned reads displayed.
CGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGT > NC_000913/1206938‑1207088 | cgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT > 1:478379‑M1/1‑76 (MQ=255)cgcTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCT > 1:133034‑M1/1‑76 (MQ=255) gctgctGTTAAGCCGCAAGAGTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAGCCTT < 2:106291‑M1/76‑1 (MQ=255) ctgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTG > 1:1013513‑M1/1‑76 (MQ=255) ctgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTG < 1:3829993‑M1/76‑1 (MQ=255) ctgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTG > 1:4275694‑M1/1‑76 (MQ=255) ctgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTG > 1:1692366‑M1/1‑76 (MQ=255) ctgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTG > 1:3139702‑M1/1‑76 (MQ=255) tgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGG > 1:3558247‑M1/1‑76 (MQ=255) tgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTT > 1:4456876‑M1/1‑76 (MQ=255) catgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGttt < 1:3530659‑M1/7‑1 (MQ=255) atgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg > 2:3367263‑M1/69‑76 (MQ=255) atgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTg < 1:909329‑M1/8‑1 (MQ=255) tAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGG > 1:863892‑M1/1‑76 (MQ=255) gttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTggg < 2:3598921‑M1/10‑1 (MQ=255) gttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTggg > 1:4425685‑M1/67‑76 (MQ=255) ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGga > 2:2381953‑M1/66‑76 (MQ=255) ttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGga < 2:1872626‑M1/11‑1 (MQ=255) taaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag > 2:2771031‑M1/65‑76 (MQ=255) taaagccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGgag > 2:4694923‑M1/65‑76 (MQ=255) aGCCGCGAGAATCCGTTTGGCGATCTACAATCGCGTGGCGCTGTGCAAACGCCTCTCCAGAACCTTGGTTTTGgag < 2:1440384/76‑1 (MQ=12) gCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGA > 1:3054562‑M1/1‑76 (MQ=255) gCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCCCGAAAACCTTGGTTTGGGCGA > 2:1537808‑M1/1‑76 (MQ=255) gCCGCAAGAATCCGTCTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAACCCTTGGGTTTGGAGA > 2:3341426‑M1/1‑76 (MQ=255) aatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGaa < 1:589677‑M1/14‑1 (MQ=255) aatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGaa > 1:175512‑M1/63‑76 (MQ=255) tccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg < 1:2298327‑M1/16‑1 (MQ=255) ccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGa < 2:2553296‑M1/17‑1 (MQ=255) aaGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGct > 2:2443761‑M1/1‑74 (MQ=255) ccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGc < 1:2993831‑M1/19‑1 (MQ=255) ccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGc > 2:941822‑M1/58‑76 (MQ=255) ccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGc > 2:32060‑M1/58‑76 (MQ=255) gAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCa < 1:2396702/76‑1 (MQ=255) gAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCa < 1:4360822/76‑1 (MQ=255) gAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTG < 2:3541305‑M1/64‑1 (MQ=255) ctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaa < 1:1495994‑M1/21‑1 (MQ=255) aaTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaa > 1:3712590/1‑76 (MQ=255) tggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcctaaccgTTGGTTTGTGAGAAGGAGCaaa < 1:2364868‑M1/22‑1 (MQ=255) gtCCGTTGGGCGAGATCAAATCGGAGGGCACTGGGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCaaa < 2:55991/75‑1 (MQ=18) tCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGACAACCTTGGTTTGGGAGCAGGctctgcc > 2:3239423‑M1/1‑69 (MQ=255) gtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAAc < 1:1890938‑M1/24‑1 (MQ=255) ccGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGCGAAGGctctgcat > 2:3890852‑M1/1‑68 (MQ=255) ccGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcat < 1:4243831‑M1/76‑9 (MQ=255) ccGTTTGGAGATATCAAATCGGATGGCACTGGGCAAGCGGCTCTCGAGGACTTTGGTTTGGGAGAAGGctctggat > 1:2852891‑M1/1‑68 (MQ=255) gTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTc > 2:1291122/1‑76 (MQ=255) gTTTGGCGATATCAAACCGGATGGCACTGTGCAAACGGCTCTCGCAAACCTTAGTTTGGGAGAAGGACCAAAACTc > 2:1201714/1‑76 (MQ=21) tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattac > 1:2238751‑M1/1‑65 (MQ=255) agcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAAt < 1:1184712‑M1/29‑1 (MQ=255) ggCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATg < 2:4499772/76‑1 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATg < 2:74357‑M1/30‑1 (MQ=255) caggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgc < 2:1878302‑M1/31‑1 (MQ=255) tatCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca > 1:656739/1‑76 (MQ=255) tCAAATCTGAGGGCACTGTGCAAACGGCTCTCGACAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAGGCAGCAAc < 1:3691938/76‑1 (MQ=25) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgt > 1:1682976‑M1/1‑55 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgt < 1:1050977‑M1/76‑22 (MQ=255) tCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgt < 2:2118591‑M1/76‑22 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcc > 1:1283116‑M1/1‑53 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg < 2:2294200/76‑1 (MQ=255) aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCt > 1:1807614/1‑76 (MQ=255) ggATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggtt < 2:4234559‑M1/76‑29 (MQ=255) ggATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggtt < 1:405588‑M1/76‑29 (MQ=255) gATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt < 2:4829059/76‑1 (MQ=255) aTGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttcc < 2:3770614‑M1/76‑31 (MQ=255) aTGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttcc < 2:3558247‑M1/76‑31 (MQ=255) aTGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggctcc > 2:4483961‑M1/1‑46 (MQ=255) aTGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt > 1:4490128/1‑76 (MQ=255) tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccg < 1:917122‑M1/76‑32 (MQ=255) ggCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgt < 1:1398381‑M1/76‑33 (MQ=255) gCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg > 1:3249637‑M1/1‑43 (MQ=255) ttgttatttcttcattttcataaacgTGGGGTTGGGAGAAGGAGCAAAACTCAATGCAGCCACGGCTACATTAGGa > 2:3278326‑M1/27‑76 (MQ=255) tgtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGACGGctctgcattacctgttggtgtcccgggtccgcggcct > 2:4030428‑M1/1‑39 (MQ=255) tgtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcct > 2:884548‑M1/1‑39 (MQ=255) tgtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGc > 1:1006361/1‑76 (MQ=255) gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCa < 1:2051134/76‑1 (MQ=255) gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAcc > 2:672476/1‑76 (MQ=255) gCAAACGGCTCTCGAAAACCTGTGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttca < 2:4585931‑M1/76‑41 (MQ=255) tcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCgg < 2:4087296‑M1/58‑1 (MQ=255) aaaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagc < 2:2058695‑M1/76‑43 (MQ=255) aaaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagc > 2:1828526‑M1/1‑34 (MQ=255) aaaCGCCTCTCGAAAACCTTGGTTTAGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCgg < 1:2704140/76‑1 (MQ=255) aCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattaactgttggcgtcccgggtccgcggccttcagcca > 1:2002400‑M1/1‑32 (MQ=255) ggCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccact < 1:3451427‑M1/76‑47 (MQ=255) ggCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTc < 1:2612853/76‑1 (MQ=255) tttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa < 2:4155291‑M1/65‑1 (MQ=255) tctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATa < 1:4843236/76‑1 (MQ=255) ctcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgc > 1:1263821‑M1/1‑26 (MQ=255) cGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcca > 1:3974428‑M1/1‑24 (MQ=255) cGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCt > 1:1110030/1‑76 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCta < 1:3271050/76‑1 (MQ=255) aaaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtat < 2:1797417/76‑1 (MQ=255) aaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtata > 2:3263038‑M1/6‑76 (MQ=255) aaaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaaca > 2:832816‑M1/1‑21 (MQ=255) aaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacag > 1:2476631‑M1/1‑20 (MQ=255) aaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacag > 1:503371‑M1/1‑20 (MQ=255) ccTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggc > 1:777598‑M1/1‑18 (MQ=255) gTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg > 2:1107924‑M1/2‑76 (MQ=255) gTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg < 1:3789278‑M1/75‑1 (MQ=255) cTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCgg < 1:3336761/76‑1 (MQ=255) ttGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctg < 1:1828555‑M1/76‑61 (MQ=255) ttGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctg < 2:2935118‑M1/76‑61 (MQ=255) | CGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGT > NC_000913/1206938‑1207088 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |