| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4169328 = | 76 (0.560) | 71 (0.600) +GGAATTAATT |
50/130 | 1.1 | 51.9% | noncoding (113/120 nt) | rrfB | 5S ribosomal RNA |
| ? | NC_000913 | = 4169500 | NA (NA) | intergenic (+165/‑136) | rrfB/murB | 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase | |||||
Only 100 of 189 total aligned reads displayed.
ATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC > NC_000913/4169254‑4169403 | tttgaacgttgcgaagcaacggcccggagggcggcgggcaggacgcccgccataaactcccaggaattaattcccc < 2:2543886‑M1/2‑1 (MQ=255) tgagcgtggcgaagcagcggcgggggggggggcgggcaggacgcccgccataaactgccaggaattaattccCCAg > 2:4457531‑M1/73‑76 (MQ=255) aacgttgcgaagcaacggcccggagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGc < 2:4389945‑M1/6‑1 (MQ=255) cgttgcgaagcaacggcccggagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCAt < 1:2209895‑M1/8‑1 (MQ=255) ttgcgaagcaacggcccggagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCa < 1:1436144‑M1/10‑1 (MQ=255) gcgaagcaacggcccggagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCaaa < 1:3986141‑M1/12‑1 (MQ=255) gAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGACATCAAATa > 2:2395110/1‑76 (MQ=9) gAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGACATCAAATa > 2:563903/1‑76 (MQ=14) aagcaacggcccggagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCAAATaa < 2:1674496‑M1/15‑1 (MQ=255) aagcaacggcccggagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCAAATaa < 1:204034‑M1/15‑1 (MQ=255) aaGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATaa < 1:2689818/76‑1 (MQ=32) gTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATaaaa < 1:802582/76‑1 (MQ=35) gTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGACATCAAATaaaa < 1:3772029/76‑1 (MQ=9) tGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAAc < 1:641687/76‑1 (MQ=35) tGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAAc > 2:3130815/1‑76 (MQ=35) ccgggccggggggggggggggcgggccgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACg > 2:1808694‑M1/58‑76 (MQ=255) aaaCGCCGTAGCGCCGATGGTAGTTTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGa < 2:2490436/76‑1 (MQ=255) aaaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGa < 2:536253/76‑1 (MQ=35) aaaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGa < 1:1487062/76‑1 (MQ=35) aaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGaa < 2:1043400/76‑1 (MQ=35) cGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAg < 1:4768230/76‑1 (MQ=35) gCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAGGCGAGAGTAGGGAACTGCCAGGAATCAAATAAAACGAAAgg > 1:4493994/1‑76 (MQ=255) ccggagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGc < 1:1065997‑M1/25‑1 (MQ=255) cggagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCt < 1:3677639‑M1/26‑1 (MQ=255) cGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGcc > 2:493425/1‑75 (MQ=25) tAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCa < 2:1520070/76‑1 (MQ=35) gagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCa < 2:3532906‑M1/28‑1 (MQ=255) agggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAg < 2:1273551‑M1/29‑1 (MQ=255) gggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGt < 1:4331378‑M1/30‑1 (MQ=255) ggggggggggcaggccgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGt > 1:4093856‑M1/47‑76 (MQ=255) gcgcCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGt < 2:1477818/76‑1 (MQ=35) gcgcCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGt < 1:2725505/76‑1 (MQ=35) cgcgGATGGTGGTGTGGGGTCTCCCCATGCGAGAGTAGGGAGCTGCCAGGCATCAAATAAAACGAAAGGCTCAGTc < 2:2288432/76‑1 (MQ=11) cgcCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTc > 2:4234531/1‑76 (MQ=35) gcCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCg > 1:2954556/1‑76 (MQ=35) gcCGATGGGAGTGTGGGGTCTCCCCAGGCGGGAGGAGGGACCTGACGGGCATCAAATAAAACGAAAGGCTCAGTCg < 2:4163506/76‑1 (MQ=11) cGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCTTCAAATAAAACGAAAGGCTCAGTCGaa > 2:737045/1‑76 (MQ=255) gcgggcgtggcgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGaaa > 2:33708‑M1/42‑76 (MQ=255) gcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGaaa < 2:1847102‑M1/35‑1 (MQ=255) gATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGaaa < 2:1400941/76‑1 (MQ=40) aTGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAg > 1:1803547/1‑76 (MQ=40) aTGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAg < 1:1018246/76‑1 (MQ=255) ggTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGAc < 2:408985/76‑1 (MQ=255) gtgtGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTggg < 1:36375/76‑1 (MQ=255) gtgtGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTggg < 1:1108969/76‑1 (MQ=255) gtgtGGGGTCTCCCCATGCGAGAGTAGGGAACAGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTggg < 2:1270567/76‑1 (MQ=255) gcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCtt < 1:559797‑M1/46‑1 (MQ=255) ccccgcaataaactgcgaggaattaattccCCAGGCATCAAATAAAGCGAAAGGCTCAGTCGAAAGCCTGGGCCtt > 1:4256955‑M1/31‑76 (MQ=255) cccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCttt > 1:3949015‑M1/30‑76 (MQ=255) ccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTc < 1:480973‑M1/48‑1 (MQ=255) cgccataaactgccaggaattaattccCCAGGCATCAAATaaaa > 1:4379303‑M1/28‑44 (MQ=255) cgccataaactgccaggaattaattccCCAGGCATCAAATaaaa > 1:4359142‑M1/28‑44 (MQ=255) cataacctgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGttt > 2:4783964‑M1/25‑76 (MQ=255) cataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGttt < 1:4071168‑M1/52‑1 (MQ=255) cataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGttt > 1:1574097‑M1/25‑76 (MQ=255) taacctgcaaggaattaatcccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTa > 1:1958163‑M1/23‑76 (MQ=255) taaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTa < 1:1680196‑M1/54‑1 (MQ=255) taaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTa < 2:1745707‑M1/54‑1 (MQ=255) taaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTa < 2:15551‑M1/54‑1 (MQ=255) aTGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCt > 1:2527410/1‑76 (MQ=35) ctgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtg < 1:3137731‑M1/58‑1 (MQ=255) gccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtgtt < 1:4436088‑M1/60‑1 (MQ=255) gagaGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtgttg > 1:1128090/1‑76 (MQ=35) ccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTgg < 2:2695010‑M1/41‑1 (MQ=255) ccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtgttg > 2:4587963‑M1/16‑76 (MQ=255) ccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtgttg < 1:3092199‑M1/61‑1 (MQ=255) agagTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtgttgt > 1:2297080/1‑76 (MQ=35) gagTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTgttgtt > 2:4322790/1‑76 (MQ=35) ggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgttt < 2:4375125‑M1/64‑1 (MQ=255) ggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTCTATCTGttgttt < 2:963311‑M1/64‑1 (MQ=255) agTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgttt > 2:3758563/1‑76 (MQ=35) agTAGGGAAATGCAAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgttt < 1:2127271/76‑1 (MQ=255) aattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtg > 2:3603019‑M1/11‑68 (MQ=255) aattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgtttgt > 1:3080783‑M1/11‑76 (MQ=255) cccaattccCCAGGCATCAAATAAAACGAAAGGCTCTGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTc < 1:3291795‑M1/67‑1 (MQ=255) cccaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTc > 1:343051‑M1/10‑76 (MQ=255) aGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTc > 1:1696218/1‑76 (MQ=35) aGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTc > 1:3502636/1‑76 (MQ=35) ttaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCg < 2:4488880‑M1/68‑1 (MQ=255) ttaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCg < 1:3459315‑M1/68‑1 (MQ=255) gggAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCg > 1:2907011/1‑76 (MQ=35) ccaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTtcgtcg > 2:1748053‑M1/9‑76 (MQ=255) taattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCgg > 1:717012‑M1/8‑76 (MQ=255) gAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGt < 2:3743801/76‑1 (MQ=35) aattccCCAGGCATCAAATAAAACGACAGGCTCAGCCGAAAGACTGGGCCTTTCGTTGTATCTGTTGTTTGTCGGt < 2:3825112‑M1/70‑1 (MQ=255) aattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGt < 2:1329789‑M1/70‑1 (MQ=255) aattccCCAGGCATCAAACAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGt < 1:259768‑M1/70‑1 (MQ=255) attccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCg > 2:1270870‑M1/6‑54 (MQ=255) attccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCg < 1:1270871‑M1/49‑1 (MQ=255) attccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTg < 2:4496050‑M1/71‑1 (MQ=255) aaCTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTg > 2:3345693/1‑76 (MQ=35) ttccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGa > 1:2828163‑M1/5‑76 (MQ=255) aCTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGa < 2:2745341/76‑1 (MQ=35) tccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTg > 1:964873‑M1/4‑74 (MQ=255) tccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGaa > 2:3291795‑M1/4‑76 (MQ=255) tccCCAGGCATCAAATAAAACGAAAAGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTCTcggtcac < 2:275004‑M1/73‑4 (MQ=255) ccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAAc > 1:3543676‑M1/3‑76 (MQ=255) ccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAAc < 1:133936‑M1/74‑1 (MQ=255) gCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACg < 2:799279/76‑1 (MQ=35) ccAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGCGAACGc > 1:521927/1‑76 (MQ=25) | ATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC > NC_000913/4169254‑4169403 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |