BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,045,713	C→G	L390V (CTT→GTT)	polA →	DNA polymerase I

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,045,713	0	C	G	100.0%	275.6 / NA	104	L390V (CTT→GTT)	polA	DNA polymerase I
Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (58/46); total (58/46)

Only 100 of 104 total aligned reads displayed.

GCTAACCTGGTCGGGCTTTCTTTTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATCTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCGCTGCTGGAAGATGAAAAG  >  NC_000913/4045641‑4045784

gCTAACCTGGTCGGGCTTTCTTTTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTg                                                                      <  2:2557439/76‑1 (MQ=255)

gCTAACCTGGTCGGGCTTTCTTTTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTg                                                                      >  1:3201486/1‑76 (MQ=255)

 cTAACCTGGTCGGGCTTTCTTTTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGa                                                                     >  1:2357248/1‑76 (MQ=255)

   aaCCTGGTCGGGCTTTCTTTTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATg                                                                   <  2:599125/76‑1 (MQ=255)

    aCCTGGTCGGGCTTTCTTTTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATgc                                                                  >  1:2091100/1‑76 (MQ=255)

    aCCTGGTCGGGCTTTCTTTTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATgc                                                                  <  1:2038731/76‑1 (MQ=255)

     ccTGGTCGGGCTTTCTTTTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATgcc                                                                 >  2:4633326/1‑75 (MQ=255)

      cTGGTCGGGCTTTCTTTTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATgcgc                                                                <  2:3197074/76‑1 (MQ=255)

       tGGTCGGGCTTTCTTTTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGcc                                                               >  2:1605733/1‑76 (MQ=255)

       tGGTCGGGCTTTCTTTTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGcc                                                               <  2:156807/76‑1 (MQ=255)

       tGGTCGGGCTTTCTTTTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGcc                                                               >  2:2228980/1‑76 (MQ=255)

         gTCGGGCTTTCTTTTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCg                                                             <  2:4050588/76‑1 (MQ=255)

         gTCGGGCTTTCTTTGGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCg                                                             <  2:4083546/76‑1 (MQ=255)

          tCGGGCTTTCTTTTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGa                                                            >  2:754996/1‑76 (MQ=255)

           cGGGCTTTCTTTTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGAt                                                           <  1:2335289/76‑1 (MQ=255)

            gggCTTTCTTCTGCTATCGATCCAGGCGCAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCAATc                                                          <  1:2714158/76‑1 (MQ=255)

             ggCTTTCTTTTGCTATCGAGCCAGGCGTAGCGGCATATATTACGGATGCTAATGATTATGCTGATACGCCCGATCa                                                         >  1:2973259/1‑76 (MQ=255)

                tttctttTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCACAt                                                      >  2:543407/1‑76 (MQ=255)

                tttctttTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAAt                                                      >  2:3212442/1‑76 (MQ=255)

                 ttctttTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAAtc                                                     <  2:4797826/76‑1 (MQ=255)

                  tctttTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAAtct                                                    <  2:1208603/76‑1 (MQ=255)

                   ctttTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAAtctc                                                   >  1:4617076/1‑76 (MQ=255)

                   ctttTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAAtctc                                                   <  1:1605734/76‑1 (MQ=255)

                    ttttGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAAtctct                                                  >  1:2063287/1‑76 (MQ=255)

                    ttttGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAAtctct                                                  >  2:2293395/1‑76 (MQ=255)

                    ttttGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGAGCCCGATCAAAtctct                                                  >  2:4819501/1‑76 (MQ=255)

                      ttGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTcg                                                <  1:4669404/76‑1 (MQ=255)

                       tGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTcgc                                               <  2:2647177/76‑1 (MQ=255)

                        gCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTcgcg                                              >  1:1087960/1‑76 (MQ=255)

                        gCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTcgcg                                              >  2:4045051/1‑76 (MQ=255)

                        gCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTcgcg                                              <  1:1884610/76‑1 (MQ=255)

                         cTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGa                                             <  1:3036761/76‑1 (MQ=255)

                         cTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGa                                             <  1:4605856/76‑1 (MQ=255)

                         cTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGATGAGGCGCCAGATCAAATCTCTCGCGa                                             >  2:4410613/1‑76 (MQ=255)

                          tATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAg                                            >  1:697580/1‑76 (MQ=255)

                           tgcGAGGCAGGGGTGGCGGCCTATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGc                                           <  2:4852630/74‑1 (MQ=255)

                           aTCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGc                                           >  1:548644/1‑76 (MQ=255)

                           aTCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGc                                           <  1:1367974/76‑1 (MQ=255)

                           aTCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGc                                           <  1:2195449/76‑1 (MQ=255)

                            tCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCg                                          >  1:1860105/1‑76 (MQ=255)

                            tCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCg                                          <  1:2312896/76‑1 (MQ=255)

                             cGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGt                                         <  1:1572364/76‑1 (MQ=255)

                              gAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGCGCGTg                                        >  2:3916269/1‑76 (MQ=255)

                              gAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTg                                        >  1:2273123/1‑76 (MQ=255)

                              gAGCCAGGCGTAGCGGCATATATCCCGGTTGCTCATGATTATGTTGTTGCGCCCGATCAAATCTCTCGCGAGCGTg                                        >  1:3787045/1‑76 (MQ=255)

                              gAGCCAAGCGTAGCGGCACATACTCCGGCTGCTCATGATTATGTTCATGCGCCCGATCAAACCCCTCGCGAGCCTg                                        >  2:1118438/1‑76 (MQ=255)

                               aGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGc                                       >  2:610210/1‑76 (MQ=255)

                               aGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGc                                       <  1:3305697/76‑1 (MQ=255)

                                gCCAGGCGTAGCGGCATATATTCCGGTTGCCCATGATTATGTTGATGCGCCCGATAAAATCTCTCGCGGGCGTGcc                                      >  1:4588299/1‑75 (MQ=255)

                                 ccAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCAc                                     <  1:2423511/76‑1 (MQ=255)

                                  cAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACt                                    >  1:629800/1‑76 (MQ=255)

                                  cAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACt                                    <  2:1385191/76‑1 (MQ=255)

                                  cAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACt                                    >  2:4710725/1‑76 (MQ=255)

                                  cAGGCGTAGCGGCATATATTCCGGGTGCTCATGATTATGTTGATGCGCCCGATCAAATCCCTCGCGAGCGTGctct                                    >  2:3489937/1‑76 (MQ=255)

                                   aGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTc                                   >  2:2148865/1‑76 (MQ=255)

                                    ggCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCg                                  >  2:4069981/1‑76 (MQ=255)

                                    ggCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCg                                  <  2:2741297/76‑1 (MQ=255)

                                     gCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGa                                 <  2:1594084/76‑1 (MQ=255)

                                     gCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGa                                 <  2:2007746/76‑1 (MQ=255)

                                     gCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGa                                 <  1:4648808/76‑1 (MQ=255)

                                     gCGTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGa                                 >  1:889559/1‑76 (MQ=255)

                                       gTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGt                               >  2:4264254/1‑76 (MQ=255)

                                       gTAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGt                               >  2:337915/1‑76 (MQ=255)

                                       ctAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCACTCACGAGCGTGCACACGaat                               >  2:1145088/2‑74 (MQ=255)

                                        tAGCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCAATCGAGtt                              >  1:2104399/1‑76 (MQ=255)

                                          gCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGt                                         <  1:4644857/63‑1 (MQ=255)

                                          gCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGt                                         >  2:4644857/1‑63 (MQ=255)

                                          gCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGc                            >  1:3742043/1‑76 (MQ=255)

                                          gCGGCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGc                            <  1:4776815/76‑1 (MQ=255)

                                            ggCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTa                          >  1:1371677/1‑76 (MQ=255)

                                            ggCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTa                          <  1:1488134/76‑1 (MQ=255)

                                             gCATATATTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTaa                         <  2:4482303/76‑1 (MQ=255)

                                             gCATATAGTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTaa                         <  2:253759/76‑1 (MQ=255)

                                                tatatTCCGGTTGCTCACGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTACAAc                      >  2:539148/1‑76 (MQ=255)

                                                 atatTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAAcc                     <  1:3459925/76‑1 (MQ=255)

                                                 atatTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAAcc                     >  1:3212980/1‑76 (MQ=255)

                                                 atatTCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAAcc                     >  2:1346404/1‑76 (MQ=255)

                                                    ttCCGGTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCgct                  <  2:3954462/76‑1 (MQ=255)

                                                     tCCGGTGGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCgctg                 <  2:3774902/76‑1 (MQ=255)

                                                      ccGGTTGCTCATGATTATGTTGATGCGCCGGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCgctgc                <  2:2178643/76‑1 (MQ=255)

                                                      caggTTGCTCATGATTATGTTGATGCGCCGGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCgctgc                <  2:2222264/74‑1 (MQ=255)

                                                       ctgTTGCTCATGATTATGTGGATGCGCCTGATCAAATCTCTCGCGATCGTGCACTCGTGTTGCTAAAACCgctgct               <  1:3662053/74‑1 (MQ=255)

                                                        ggTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCGctgctg              >  2:2842293/1‑76 (MQ=255)

                                                         gTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCGCTGCTgg             <  1:4517778/76‑1 (MQ=255)

                                                         gTTGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCGCTGCTgg             >  2:3559201/1‑76 (MQ=255)

                                                          ttGCTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCGCTGCTGGa            >  2:2788374/1‑76 (MQ=255)

                                                           tGCTCATGATTATGTTGTTGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCGCTGCTGGaa           <  2:3787045/76‑1 (MQ=255)

                                                           ggCTCAGGATGATGTTGATGCGCCCGATCAAATCTCTCGCGATCGTGCACTCTTGTTGATAAAACCGCTGCTGGaa           >  1:3149337/2‑76 (MQ=255)

                                                             cTCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTACAAACGCTGCTGGCAGa         >  2:1542818/1‑76 (MQ=255)

                                                              tCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCGCTGCTGGAAGAt        <  2:2091099/76‑1 (MQ=255)

                                                              tCATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCGCTGCTGGAAGAt        >  1:903712/1‑76 (MQ=255)

                                                               cATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCGCTGCTGGAAGATg       >  2:1967922/1‑76 (MQ=255)

                                                               cATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCGCTGCTGGAAGATg       <  1:3828145/76‑1 (MQ=255)

                                                               cATGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCGCTCATGGAAGATg       >  1:1500102/1‑76 (MQ=255)

                                                                aTGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCGCTGCTGGAAGATGa      >  1:3076631/1‑76 (MQ=255)

                                                                aTGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCGCTGCTGGAAGATGa      >  1:4497732/1‑76 (MQ=255)

                                                                 tGATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCGCTGCTGGAAGATGaa     >  1:1869165/1‑76 (MQ=255)

                                                                  gATTATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCGCTGCTGGAAGATGaaa    >  1:3012766/1‑76 (MQ=255)

                                                                    ttATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCGCTGCTGGAAGATGAAAAg  <  2:2035644/76‑1 (MQ=255)

                                                                    ttATGTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCGCTGCTGGAAGATGAAAAg  >  1:455433/1‑76 (MQ=255)

GCTAACCTGGTCGGGCTTTCTTTTGCTATCGAGCCAGGCGTAGCGGCATATATTCCGGTTGCTCATGATTATCTTGATGCGCCCGATCAAATCTCTCGCGAGCGTGCACTCGAGTTGCTAAAACCGCTGCTGGAAGATGAAAAG  >  NC_000913/4045641‑4045784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`