BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,600,078	C→T	W135* (TGG→TAG)	yjjP ←	putative structural protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,600,078	0	C	T	100.0%	427.4 / NA	136	W135* (TGG→TAG)	yjjP	putative structural protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (63/73); total (63/73)

Only 100 of 136 total aligned reads displayed.

GCACCATCCCAGCCACCGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCCATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTAATCCAGCAGATGATGC  >  NC_000913/4600006‑4600149

gCACCATCCCAGCCACCGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATc                                                                      <  2:2203186/76‑1 (MQ=255)

gCACCATCCCAGCCACCGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATc                                                                      <  1:1514100/76‑1 (MQ=255)

 cACCATCCCAGCCACCGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCt                                                                     >  2:2804059/1‑76 (MQ=255)

  cccATCCCAGCCACCGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCtt                                                                    <  2:2674494/75‑1 (MQ=255)

  aCCATCCCAGCCACCGTTATTGAGGTGACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATcgt                                                                    <  2:2707594/76‑3 (MQ=255)

   ccATCCCAGCCACCGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTg                                                                   <  1:3088054/76‑1 (MQ=255)

     aTCCCAGCCACCGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTggg                                                                 >  2:3068538/1‑76 (MQ=255)

       cccAGCCACCGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTa                                                               >  1:3775713/1‑76 (MQ=255)

        ccAGCCACCGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTaa                                                              <  2:4535764/76‑1 (MQ=255)

         cAGCCACCGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAAc                                                             <  1:113088/76‑1 (MQ=255)

         cAGCCACCGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAAc                                                             <  1:3744702/76‑1 (MQ=255)

         cAGCCACCGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAAc                                                             >  1:185213/1‑76 (MQ=255)

          aGCCACCGTTATTGAGTTTACAGAACCAGGCGCAAGAAAGGACACCCCTTAAGGCTACCAGCTATCTTGTGTAACg                                                            >  1:4279610/1‑76 (MQ=255)

          aGCCACCGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACg                                                            >  1:4250305/1‑76 (MQ=255)

           gacACCGTTATTGAGTTTATAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATACTGCGTAACGt                                                           >  1:2504396/3‑76 (MQ=255)

           gCCACCGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCACCCATTAAGGCTACCAGCTATCTTGGGTAACGt                                                           <  2:2673404/76‑1 (MQ=255)

            ccACCGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTa                                                          >  1:2260231/1‑76 (MQ=255)

            ccACCGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTa                                                          <  1:2638109/76‑1 (MQ=255)

              cccGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAAt                                                        <  2:2546001/75‑1 (MQ=255)

              aCCGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTaag                                                        >  2:488884/1‑75 (MQ=255)

              aCCGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAAt                                                        >  1:157195/1‑76 (MQ=255)

              aCCGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAAt                                                        <  1:4000412/76‑1 (MQ=255)

               ccGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATg                                                       <  2:3929111/76‑1 (MQ=255)

               ccGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATg                                                       <  2:2049650/76‑1 (MQ=255)

               ccGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATg                                                       <  2:490163/76‑1 (MQ=255)

               ccGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATg                                                       >  1:919324/1‑76 (MQ=255)

               ccGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATg                                                       >  1:2451801/1‑76 (MQ=255)

                 gTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGc                                                     >  1:1073233/1‑76 (MQ=255)

                 gTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGc                                                     <  2:4438785/76‑1 (MQ=255)

                  ttATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCt                                                    <  2:3447929/76‑1 (MQ=255)

                   tagtGAGTCTACAGAAACAGGCGCAAGAAAGTCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTg                                                   <  2:875754/73‑1 (MQ=255)

                   tATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTg                                                   <  2:850676/76‑1 (MQ=255)

                     ttGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGaa                                                 <  2:1470214/76‑1 (MQ=255)

                     ttGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGaa                                                 >  1:465267/1‑76 (MQ=255)

                      tGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAAt                                                >  2:3161393/1‑76 (MQ=255)

                       gAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAAtt                                               >  1:926312/1‑76 (MQ=255)

                        aGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAAttt                                              >  2:3812583/1‑76 (MQ=255)

                        aGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAAttt                                              <  1:1510964/76‑1 (MQ=255)

                         gTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTg                                             <  2:3740278/76‑1 (MQ=255)

                         gTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTg                                             <  2:1332440/76‑1 (MQ=255)

                          tttACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTTAATTTgt                                            >  2:316023/1‑75 (MQ=255)

                           ttACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGc                                           >  2:3675078/1‑76 (MQ=255)

                              cAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTaa                                        <  2:3454155/76‑1 (MQ=255)

                              cAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTaa                                        <  2:1225404/76‑1 (MQ=255)

                              cAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTaa                                        <  1:2982194/76‑1 (MQ=255)

                               aGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTaaa                                       <  2:4733426/76‑1 (MQ=255)

                               aGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTaaa                                       <  2:3837821/76‑1 (MQ=255)

                               aGAAACAGGCGCAAGAAAGGCCAACCATGAAGGCTACCAGCTATCGTGGGTAACGTAATGGCTGAATTTGGATaaa                                       >  1:1857136/1‑76 (MQ=255)

                                 aaaCAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATc                                     <  1:4636781/76‑1 (MQ=255)

                                  aaCAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCg                                    <  1:1256462/76‑1 (MQ=255)

                                    cAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGtt                                  <  2:4587437/76‑1 (MQ=255)

                                    cAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGtt                                  <  1:2929990/76‑1 (MQ=255)

                                    cAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGtt                                  <  2:2873961/76‑1 (MQ=255)

                                    cAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGtt                                  <  1:4789032/76‑1 (MQ=255)

                                     aGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGttt                                 <  2:1321710/76‑1 (MQ=255)

                                     aGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGttt                                 <  2:2510649/76‑1 (MQ=255)

                                     aGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGttt                                 <  2:2495325/76‑1 (MQ=255)

                                     aGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGttt                                 >  1:61268/1‑76 (MQ=255)

                                     aGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGttt                                 >  2:3866434/1‑76 (MQ=255)

                                      ggCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTtc                                <  2:1603635/76‑1 (MQ=255)

                                      ggCGCAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTtc                                <  1:3895126/76‑1 (MQ=255)

                                         gcAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTctct                             >  2:4382575/1‑76 (MQ=255)

                                         gcAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTctct                             <  1:2184864/76‑1 (MQ=255)

                                          cAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTa                            <  1:1765417/76‑1 (MQ=255)

                                          cAAGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTa                            <  2:3311078/76‑1 (MQ=255)

                                           aaGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTAc                           <  1:3443136/76‑1 (MQ=255)

                                           aaGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTAc                           <  1:3837008/76‑1 (MQ=255)

                                            aGAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACg                          >  2:4208002/1‑76 (MQ=255)

                                             gAAAGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTgcgc                         <  1:2384083/76‑1 (MQ=255)

                                              aaaGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGcc                        <  2:1794424/76‑1 (MQ=255)

                                              aaaGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGcc                        <  1:3845817/76‑1 (MQ=255)

                                              aaaGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGcc                        <  1:3884908/76‑1 (MQ=255)

                                               aaGGCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGGTTCTCTACGCCt                       >  1:1859800/1‑76 (MQ=255)

                                                 ggCCAACCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCttt                     <  2:4530602/76‑1 (MQ=255)

                                                  gCCAACCATTAAGGCTACCAGCTATCCTGGGTAACGTAATGGCTGAATTTGGCTTAATCGGTTCTCTACGCCTTTg                    >  1:1621309/1‑76 (MQ=255)

                                                   ccAACCATTAAGGCTACCAGCTATCTTGGGTAACGGAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGt                   <  2:4396815/76‑1 (MQ=255)

                                                     aaCCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTaa                 >  2:304558/1‑76 (MQ=255)

                                                     aaCCATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTaa                 >  2:4367942/1‑76 (MQ=255)

                                                      aCCATTAAGGCTACCAGCTACCTTGGGTAACGTAATGGCTGAATCTGGCTAAATCGCTTCTCTACGCCCTTGCAAt                >  2:1694326/1‑76 (MQ=255)

                                                       ccATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTAATc               >  2:1320363/1‑76 (MQ=255)

                                                        cATTAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTAATcc              >  1:1359852/1‑76 (MQ=255)

                                                         aTTAAGGCTACCATCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTAATCca             <  1:81317/76‑1 (MQ=255)

                                                          ttAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTAATCcag            >  2:3592321/1‑76 (MQ=255)

                                                          ttAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTAATCcag            <  1:3682079/76‑1 (MQ=255)

                                                          ttAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTAATCcag            <  1:3675078/76‑1 (MQ=255)

                                                          ttAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTAATCcag            >  2:2283305/1‑76 (MQ=255)

                                                           tAAGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTAATCcagc           >  1:1335995/1‑76 (MQ=255)

                                                            aaGGCTACCAGCTATCTTGGGGAACGTAATGGCTGAAGTTGGCTAAATCGTTTCTCTACGCCGTTCTAAACcagca          >  1:1675915/1‑76 (MQ=255)

                                                             aGGCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTAATCcagcag         <  1:2946117/76‑1 (MQ=255)

                                                              ggCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTCAGCCTTTGTAATCCAGCAga        >  1:4034118/1‑76 (MQ=255)

                                                               gCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTAATCCAGCAgat       <  1:1561960/76‑1 (MQ=255)

                                                               gCTACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTAATCCAGCAgat       <  1:3998962/76‑1 (MQ=255)

                                                                 tACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTAATCcagca          >  1:1482983/1‑71 (MQ=255)

                                                                 tACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTAATCcagca          <  2:1482982/71‑1 (MQ=255)

                                                                 tACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTAATCCAGCAgatga     >  1:4356033/1‑76 (MQ=255)

                                                                 tACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTAATCCAGCAgatga     >  1:3122303/1‑76 (MQ=255)

                                                                 tACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTAATCCAGCAgatga     >  1:1389927/1‑76 (MQ=255)

                                                                 tACCAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGCTTCTCTACGCCTTTGTAATCCAGCAgatga     >  1:2440865/1‑76 (MQ=255)

                                                                   ccAGCTATCTTGGGGAACGTAAGGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTAATCCAGCAGatgatg   >  1:2165247/1‑76 (MQ=255)

                                                                    cAGCTATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTAATCCAGCAGATGATGc  >  2:3027949/1‑76 (MQ=255)

GCACCATCCCAGCCACCGTTATTGAGTTTACAGAAACAGGCGCAAGAAAGGCCAACCATTAAGGCTACCAGCCATCTTGGGTAACGTAATGGCTGAATTTGGCTAAATCGTTTCTCTACGCCTTTGTAATCCAGCAGATGATGC  >  NC_000913/4600006‑4600149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`