| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,072,030 | T→A | C824S (TGC→AGC) | b2000 → | outer membrane fluffing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,072,030 | 0 | T | A | 98.0% | 420.3 / NA | 152 | C824S (TGC→AGC) | b2000 | outer membrane fluffing protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base A (72/77); minor base G (1/2); total (73/79) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 152 total aligned reads displayed.
GCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCTGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCC > NC_000913/2071958‑2072102 | ctgGCCGTTCTGCCGTTGGTGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCt < 2:3839484/76‑1 (MQ=255) ctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGGTGATGCCGGCAGccg > 2:2403124/1‑75 (MQ=255) ctgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGNCCGGGATGATGCCGGCAGCCt < 1:3763305/76‑1 (MQ=255) tgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTg > 1:2497140/1‑76 (MQ=255) tgGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTg < 1:230416/76‑1 (MQ=255) gCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTggg < 1:4427489/76‑1 (MQ=255) gCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTggg < 1:1018074/76‑1 (MQ=255) gCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCCggg > 1:4151166/1‑76 (MQ=255) gCCATGCTTCCGTTGATGTTAAGGAGGATGACGGCTCCCGGGCCGGCACGGTCCGGGCGGATGCCGGCGGCCTcgg > 2:3084421/1‑76 (MQ=255) ccATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGc < 1:1768030/76‑1 (MQ=255) ccATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGc > 1:2848561/1‑76 (MQ=255) ccATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGc > 1:1497019/1‑76 (MQ=255) ccATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCAGCAGCCTGGGc > 1:962765/1‑76 (MQ=255) cATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCg > 1:4572580/1‑76 (MQ=255) aTTCTTCCGTTGATGTTAAGGATGCTAATGTCTCCCGTGCCGGCACGTTCCGGGATGATGCCGGCAGCCTGTGCgg < 1:3391181/76‑1 (MQ=255) aTTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCgg < 1:1589291/76‑1 (MQ=255) aTTCTTCCGTTGATGTTAAGGATGAGGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCgg < 2:3230823/76‑1 (MQ=255) ttcttcCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCt < 2:3768934/69‑1 (MQ=255) ctctttCGTGGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGa < 1:319927/75‑1 (MQ=255) tcttcCGTTGATGTTAAGGATGATGACGGCTCCCGTGACGGCACGGTCCGGGATGATGCCGGCAGCCTGGGGGGAt > 1:276547/1‑76 (MQ=255) tcgtcCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGAt < 1:1815577/73‑1 (MQ=255) tcCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATAcc > 1:2986771/1‑76 (MQ=255) cGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTg < 1:238780/76‑1 (MQ=255) cGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTg > 1:1544699/1‑76 (MQ=255) cGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCCGGGCGGATACCTg > 2:3723329/1‑76 (MQ=255) gTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGa > 1:4681536/1‑76 (MQ=255) gTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGa > 1:2564145/1‑76 (MQ=255) gATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATc > 1:4535345/1‑76 (MQ=255) aTGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGCATCt > 1:2152510/1‑76 (MQ=255) tGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTg < 1:1018969/76‑1 (MQ=255) tGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTg > 1:2398904/1‑76 (MQ=255) gTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCCGGGCGGATACCTGAATCTgg > 2:4269875/1‑76 (MQ=255) ttAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGt < 1:2772437/76‑1 (MQ=255) tAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGGTACCTGAATCTGGtc > 2:2658180/1‑75 (MQ=255) gaggaggATGGCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTac < 2:1416142/75‑1 (MQ=255) gaGGGTGAGGGCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTac < 2:726146/75‑1 (MQ=255) atgatgatGACGGGTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTaca < 2:3268361/74‑1 (MQ=255) gatgatGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGGTACCTGAATCTGGTccaca > 1:397168/1‑76 (MQ=255) gggtgaGGGCGCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACg < 1:329154/73‑1 (MQ=255) atgaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtc < 1:4148868/76‑1 (MQ=255) tgaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCAGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtcc < 2:962764/76‑1 (MQ=255) gaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtcct < 2:4134687/76‑1 (MQ=255) gaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtccc > 1:4243519/1‑75 (MQ=255) gaCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCCGGAGCTGGGCCACACGcccc > 2:4753193/1‑75 (MQ=255) aCGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtcctc > 1:1342258/1‑76 (MQ=255) cGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtcctcc < 1:1153654/76‑1 (MQ=255) cGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtcctcc > 2:2652173/1‑76 (MQ=255) cGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGtccccc > 1:769824/1‑76 (MQ=255) ggCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCCGCGCGGATATCTGAATCTGGCACACCCCccctccc > 2:4296197/1‑75 (MQ=255) cTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGc > 1:1929796/1‑76 (MQ=255) cTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGc < 2:3741581/76‑1 (MQ=255) tCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGcc > 1:1152050/1‑76 (MQ=255) tCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGcc < 1:2424931/76‑1 (MQ=255) tCCCGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGcc > 2:1738749/1‑76 (MQ=255) tCCCGTGCCGGCACGGTCCGGGAAGACGCCGGCAGCCTGGTCGGCTAACTGAAGCTCGGACACACGTCCGCCGGct > 1:4169906/1‑75 (MQ=255) ccGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCtg > 1:4471826/1‑76 (MQ=255) cGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCtgt > 1:723172/1‑76 (MQ=255) cGTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCtgt < 2:3644310/76‑1 (MQ=255) gTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCtgtg < 1:2076501/76‑1 (MQ=255) gTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCtgtg > 2:2219864/1‑76 (MQ=255) gTGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCtgtg < 2:1143480/76‑1 (MQ=255) tGCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTgg < 2:3635846/76‑1 (MQ=255) gcgggCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTggg < 2:3531701/73‑1 (MQ=255) gCCGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTggg < 2:4094313/76‑1 (MQ=255) ccGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGc > 1:3385913/1‑76 (MQ=255) cGGCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCt < 1:3500853/76‑1 (MQ=255) ggCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGccg > 2:4424202/1‑74 (MQ=255) ggCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTg < 2:1447690/76‑1 (MQ=255) ggCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGCCCTCCGGCCTGCGGGGTg > 2:4558512/1‑76 (MQ=255) gCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGa > 1:3016385/1‑76 (MQ=255) gCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGa < 2:434346/76‑1 (MQ=255) gCACGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGACTGTGGGCTGa > 1:3462164/1‑76 (MQ=255) aCGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACa > 1:3808913/1‑76 (MQ=255) aCGGTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACa < 1:3723030/76‑1 (MQ=255) ggTCCGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACAtt < 2:2640281/76‑1 (MQ=255) ggTCCGGGAAGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTACTCACGCCTGTGACATGACAtt > 1:71145/1‑76 (MQ=255) ccGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGTGCTGACATtgtg < 2:2851037/76‑1 (MQ=255) ccGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATtgtg < 1:2213635/76‑1 (MQ=255) ccGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATtgtg < 2:127200/76‑1 (MQ=255) ccGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATtgtg < 1:1880251/76‑1 (MQ=255) cGGGATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTgg > 2:3340501/1‑76 (MQ=255) gggATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGc < 2:3070597/76‑1 (MQ=255) gggATCATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGc > 2:1685605/1‑76 (MQ=255) ggATGATGCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGca > 2:461815/1‑76 (MQ=255) gatgatGCCGGCAGCCTGCGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGGAATTGTGGgac > 1:2037860/1‑76 (MQ=255) ggatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACGCACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAg < 2:709815/75‑1 (MQ=255) gatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACCCACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAgg > 2:3001469/1‑76 (MQ=255) gatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAgg > 1:4287871/1‑76 (MQ=255) gatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAgg < 2:4153937/76‑1 (MQ=255) gatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAgg > 2:2959390/1‑76 (MQ=255) gatgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAgg < 2:2074384/76‑1 (MQ=255) atgCCGGCAGCCTGGGCGGCTACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAggg < 1:916547/76‑1 (MQ=255) atgCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAggg < 2:2763233/76‑1 (MQ=255) ggCCGGCGGCCTGGGCGGATACCTGCATCTGGTCCACACGTCCTCCGGCCTGTGGGGTTACATTGTGGGACAGGGa < 2:2782484/75‑1 (MQ=255) gCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGac > 2:1953994/1‑75 (MQ=255) gCCGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGaa < 2:2204697/76‑1 (MQ=255) ccGGCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAAc < 2:3413081/76‑1 (MQ=255) cGGCAGCCTGGGCGGATGCCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAAcc < 2:550549/76‑1 (MQ=255) ggCAGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAAccc < 2:2398903/76‑1 (MQ=255) ggCAGCCGGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAAccc < 2:4521195/76‑1 (MQ=255) | GCTGGCCATTCTTCCGTTGATGTTAAGGATGATGACGGCTCCCGTGCCGGCACGGTCCGGGATGATGCCGGCTGCCTGGGCGGATACCTGAATCTGGTACACACGTCCTCCGGCCTGTGGGCTGACATTGTGGCACAGGGAACCC > NC_000913/2071958‑2072102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |