| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,781,027 | C→G | intergenic (‑151/+58) | ypjA ← / ← b2648 | putative ATP‑binding component of a transport system/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,781,027 | 0 | C | G | 98.2% | 137.5 / ‑6.1 | 57 | intergenic (‑151/+58) | ypjA/b2648 | putative ATP‑binding component of a transport system/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base G (27/29); minor base A (1/0); total (28/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.91e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
TGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGA‑GCCGTTGCCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTT > NC_000913/2780955‑2781098 | tgtgGTTGGATAAAAAAGTCAAGCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCa > 2:4130688/1‑76 (MQ=38) gtgGTTGGATAAAAAAGTCAATCCATTCAGGAACTACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCaa < 1:4709750/76‑1 (MQ=38) tgGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCaaa > 2:1005755/1‑76 (MQ=38) tgGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCaaa < 2:2633455/76‑1 (MQ=38) gtttGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCaaaa > 1:3688103/3‑76 (MQ=38) ggTTGGATAGAAAAGTCAAGCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCaaaa < 2:1875448/76‑1 (MQ=37) ggTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCaaaa < 1:3367493/76‑1 (MQ=38) ggTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTAGTCTTTTCTTTCGACAATGAGGCCGTTGGCaaaa < 2:1514314/76‑1 (MQ=37) gTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCaaaat < 1:1370716/76‑1 (MQ=38) gTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCaaaat > 2:2024836/1‑76 (MQ=38) ttGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTCACaaaata > 2:4779150/1‑76 (MQ=255) tAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATg < 2:1514801/76‑1 (MQ=37) aaaaaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGa < 1:2352269/76‑1 (MQ=37) aaaaaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGa < 1:2586844/76‑1 (MQ=37) aaaaaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGa > 1:1664886/1‑76 (MQ=37) aaaaaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGAt > 2:700313/1‑76 (MQ=37) aaGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTa > 2:150108/1‑76 (MQ=25) gTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACa < 1:4317170/76‑1 (MQ=37) cAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATa < 2:4567656/76‑1 (MQ=37) cAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATa < 1:1621521/76‑1 (MQ=37) cAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATa < 1:4062527/76‑1 (MQ=37) aaTCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATaa > 2:992557/1‑76 (MQ=37) aTCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAAt < 2:2647703/76‑1 (MQ=37) aTCCATTCAGGAAATACGGGCGGATTCTTTTCTTTCGACAATGAGGCCGGTGGCAAAATAAAATGATTTACATAAt < 2:2657467/76‑1 (MQ=25) tCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATc > 1:1425451/1‑76 (MQ=37) tCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATc > 1:4759706/1‑76 (MQ=37) ccATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCg < 1:4269728/76‑1 (MQ=37) cATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGt > 2:3304146/1‑76 (MQ=37) ttCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGttt < 2:357527/76‑1 (MQ=37) ttCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGttt < 2:3443548/76‑1 (MQ=37) ttCAGGAAATACGGGAGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAAGCGgtt > 1:794848/1‑76 (MQ=21) ggAAATACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtga < 1:2491662/76‑1 (MQ=25) aaaTACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCtgatg < 1:1011427/76‑1 (MQ=25) aTACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGaa < 2:4136693/76‑1 (MQ=25) aTACGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGaa > 1:2721064/1‑76 (MQ=25) ttcGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAat < 1:241476/74‑1 (MQ=21) cGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAatat > 1:2025962/1‑76 (MQ=25) cGGGCGTATTCTTTTCTTTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAatat < 1:3468285/76‑1 (MQ=25) cGGGCGTATTCTTGTCTTTCGACAATGAGGCCGTGGGCAAAATAAAAGGATTTACATAATCGTTTCTGATGAatat < 1:3490809/76‑1 (MQ=18) ttcttttcttTCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCt > 1:1767398/1‑76 (MQ=18) tcttttctttCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTc > 1:1968993/1‑76 (MQ=18) cttttctttCGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATAGTTTCTGATGAATATCTTCTGCTca > 1:625621/1‑76 (MQ=18) tttctttcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTcaca < 1:2152662/76‑1 (MQ=17) ctttcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATaa > 2:2610052/1‑76 (MQ=17) ctttcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATaa > 2:2592587/1‑76 (MQ=17) tttcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATaaa > 1:2292511/1‑76 (MQ=17) tttcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATaaa > 2:1843970/1‑76 (MQ=17) ttcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATaaaa > 1:4113533/1‑76 (MQ=17) tcGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATaaaaa > 2:3897203/1‑76 (MQ=17) cGACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAAt > 2:2436036/1‑76 (MQ=17) gACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATc < 1:4436922/76‑1 (MQ=17) gACAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATc < 2:940587/76‑1 (MQ=17) aCAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATca < 2:3076437/76‑1 (MQ=17) cAATGAGGCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATcac > 2:2961540/1‑76 (MQ=17) aggCCGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAAt > 2:4761082/3‑76 (MQ=255) gcGTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAAc < 1:1518321/75‑1 (MQ=255) gTTGGCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACtt > 2:4605441/1‑76 (MQ=255) | TGTGGTTGGATAAAAAAGTCAATCCATTCAGGAAATACGGGCGTATTCTTTTCTTTCGACAATGA‑GCCGTTGCCAAAATAAAATGATTTACATAATCGTTTCTGATGAATATCTTCTGCTCACATAAAAATCACACAATAACTT > NC_000913/2780955‑2781098 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |