BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,806,762	T→C	intergenic (+617/‑876)	proX → / → b2682	high‑affinity transport system for glycine betaine and proline/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,806,762	0	T	C	100.0%	284.2 / NA	111	intergenic (+617/‑876)	proX/b2682	high‑affinity transport system for glycine betaine and proline/hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (54/57); total (54/57)

Only 100 of 120 total aligned reads displayed.

TCCGCTGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGTTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCACCGTCTTTTG  >  NC_000913/2806689‑2806832

tCCGCTGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGCCGGctgctg                                                                      >  2:3486701/1‑76 (MQ=255)

 ccGCTGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTgg                                                                     >  2:3209934/1‑76 (MQ=255)

 ccGCTGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTgg                                                                     >  1:1359716/1‑76 (MQ=255)

 ccGCTGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTgg                                                                     <  1:4573873/76‑1 (MQ=255)

   gCTGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTgggg                                                                   <  2:2736531/76‑1 (MQ=255)

   gCTGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTgggg                                                                   <  2:1235113/76‑1 (MQ=255)

    cTGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCCGCTggggg                                                                  >  2:4385837/1‑75 (MQ=255)

      ggCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGGTc                                                                >  2:4790887/1‑76 (MQ=255)

      ggCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATc                                                                <  2:4086239/76‑1 (MQ=255)

         aGCGACGCTGGCTTCACCGGATAAACGCGGCAACGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTg                                                             >  2:3360882/1‑76 (MQ=255)

         aGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTg                                                             <  2:3682000/76‑1 (MQ=255)

         aGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTg                                                             >  1:3362933/1‑76 (MQ=255)

          gCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGc                                                            >  2:567123/1‑76 (MQ=255)

          gCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGc                                                            <  2:1478378/76‑1 (MQ=255)

            gACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTg                                                          <  2:2933241/76‑1 (MQ=255)

            gACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTg                                                          >  2:463482/1‑76 (MQ=255)

             aCGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTgg                                                         >  2:3672189/1‑76 (MQ=255)

               gCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCa                                                       >  1:605935/1‑76 (MQ=255)

               gCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTCGCGATCTCGCTGGcc                                                       >  2:237968/1‑75 (MQ=255)

               gCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTCCTGCTGGGGTTCTCGCCGGcc                                                       >  2:255000/1‑75 (MQ=255)

                cTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCAc                                                      <  1:4339232/76‑1 (MQ=255)

                 tGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCCCTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCCCg                                                     >  2:4602100/1‑76 (MQ=255)

                 tGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACg                                                     >  1:125853/1‑76 (MQ=255)

                   gCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGa                                                   <  1:615590/76‑1 (MQ=255)

                     ttCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACa                                                 <  1:2888787/76‑1 (MQ=255)

                      tCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAg                                                <  1:817207/76‑1 (MQ=255)

                      tCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAg                                                <  1:3779897/76‑1 (MQ=255)

                       cACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGt                                               >  1:4318866/1‑76 (MQ=255)

                       cACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGt                                               <  1:1899800/76‑1 (MQ=255)

                        aCCGGATAAGCGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGtt                                              <  2:4028091/76‑1 (MQ=255)

                        aCCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGtt                                              <  2:366970/76‑1 (MQ=255)

                        aCCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGtt                                              <  1:209858/76‑1 (MQ=255)

                        aCCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGtt                                              >  1:610886/1‑76 (MQ=255)

                         ccGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTg                                             >  1:282415/1‑76 (MQ=255)

                         ccGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTg                                             <  2:4159932/76‑1 (MQ=255)

                         ccGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTg                                             >  1:2019029/1‑76 (MQ=255)

                         ccGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTg                                             <  1:1398352/76‑1 (MQ=255)

                          cGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGc                                            >  2:2941089/1‑76 (MQ=255)

                           ggATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGcc                                           <  2:1644649/76‑1 (MQ=255)

                           ggATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGcc                                           >  1:4339559/1‑76 (MQ=255)

                           ggATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGGTGcc                                           >  1:634902/1‑76 (MQ=255)

                            gATCAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCg                                          <  1:2074670/76‑1 (MQ=255)

                            gATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCg                                          >  1:4040174/1‑76 (MQ=255)

                              tAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGa                                        <  2:2775787/76‑1 (MQ=255)

                              tAAACGAGGCAAAGTGGATGGCACGATTATGACCGGTCTGCTGCTGGGGCTCTTGCTGGCACGGACAGTTGCTGGa                                        >  1:3428349/1‑76 (MQ=255)

                               aaaCGCGGCAAAGTGGTCGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGAt                                       <  1:4778274/76‑1 (MQ=255)

                                aaCGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGAtt                                      >  2:2066679/1‑76 (MQ=255)

                                 ccgcgACAAACTGGTTGGTACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACCGTTGCCGGATTg                                     <  2:3133232/75‑1 (MQ=255)

                                  cgcgGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGc                                    <  1:1618788/76‑1 (MQ=255)

                                   gcgGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCt                                   >  1:4679126/1‑76 (MQ=255)

                                    cgGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTg                                  <  2:3838263/76‑1 (MQ=255)

                                    cgGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTg                                  <  2:2454348/76‑1 (MQ=255)

                                     ggCAAAGTGGTTGGCACTATTATGAGCGGTCGGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTgg                                 <  2:4274082/76‑1 (MQ=255)

                                      gCAGAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGc                                <  2:4807818/76‑1 (MQ=255)

                                      gCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGc                                >  1:4694584/1‑76 (MQ=255)

                                       cAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCg                               >  1:1158715/1‑76 (MQ=255)

                                       cAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCg                               <  2:2064993/76‑1 (MQ=255)

                                        aaaGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGa                              <  2:2233423/76‑1 (MQ=255)

                                        aaaGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGa                              <  1:567123/76‑1 (MQ=255)

                                        aaaGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGa                              >  2:3481360/1‑76 (MQ=255)

                                         aaGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGaa                             <  2:757488/76‑1 (MQ=255)

                                          aGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAAt                            <  2:3281372/76‑1 (MQ=255)

                                          aGTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAAt                            >  1:1241853/1‑76 (MQ=255)

                                           gTGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAAtc                           <  1:3839866/76‑1 (MQ=255)

                                            tGGTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAAtct                          <  1:3902102/76‑1 (MQ=255)

                                             ggTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAAtctc                         <  2:1629651/76‑1 (MQ=255)

                                             ggTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAAtctc                         >  2:1195316/1‑76 (MQ=255)

                                             ggTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAAtctc                         <  1:4188969/76‑1 (MQ=255)

                                              gTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTcg                        >  2:2796194/1‑76 (MQ=255)

                                              gTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTcg                        >  2:4438258/1‑76 (MQ=255)

                                              gTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTcg                        >  2:2537117/1‑76 (MQ=255)

                                              gTTGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTcg                        >  2:2985223/1‑76 (MQ=255)

                                               ttGGCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTcgg                       >  2:4212514/1‑76 (MQ=255)

                                               gtGGCACTATTATGAGCGGTATGCTGCTGGGGATCGTGCTGGCACGGACAGTGGCCGGATTGCTGGCGAATCGcgg                       >  1:2658906/2‑76 (MQ=255)

                                                 ggCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTcggcg                     <  2:3273653/76‑1 (MQ=255)

                                                 ggCACTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGCATTGCTGGCCCATCTcagcg                     >  2:22484/1‑76 (MQ=255)

                                                  gCACTATTATGAGCGGTCTGCTGCTGGGGACCTTGCTGGCACGGACAGGCCCCGCATTCCCTCCGAAACTcggcgc                    >  2:137992/1‑75 (MQ=255)

                                                     cTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTctgcggttg                 <  1:964915/76‑4 (MQ=255)

                                                     cTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTg                 <  2:3288448/76‑1 (MQ=255)

                                                     cTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTg                 <  1:2066680/76‑1 (MQ=255)

                                                     cTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTg                 <  1:2702921/76‑1 (MQ=255)

                                                     cTATTATGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTg                 <  1:3587628/76‑1 (MQ=255)

                                                      tattatGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTgg                >  1:1293890/1‑76 (MQ=255)

                                                      tattatGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTgg                >  1:2079696/1‑76 (MQ=255)

                                                        ttatGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTCGCCCGATTGCTGGCGAACATCTCAGGCTGgcg              >  1:4070967/1‑76 (MQ=255)

                                                          atGAGCGGTGTGCTGCTGGGGATCTGGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCa            <  2:1879606/76‑1 (MQ=255)

                                                          atGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGgcgcc            >  2:2962157/1‑75 (MQ=255)

                                                           tGAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCAc           >  1:4263986/1‑76 (MQ=255)

                                                            gAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCAcc          <  2:793132/76‑1 (MQ=255)

                                                            gAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCAcc          <  2:4174709/76‑1 (MQ=255)

                                                            gAGCGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCAcc          <  2:3855627/76‑1 (MQ=255)

                                                               cGGTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCACCGTc       <  1:4385837/76‑1 (MQ=255)

                                                                 gTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCACCGTCtt     >  1:4085468/1‑76 (MQ=255)

                                                                 gTCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCACCGTCtt     >  2:1045452/1‑76 (MQ=255)

                                                                  tCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCACCg         >  1:2593105/1‑71 (MQ=255)

                                                                  tCTGCTGCTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCACCg         <  2:2593105/71‑1 (MQ=255)

                                                                    tgctgcTGGGGATCTTGCTGGCACGGGCAGTTGCCGGATCGCTGGCGAATCTGCGCGGCGGGGGCACTCTCTTTTg  >  1:171782/1‑76 (MQ=255)

                                                                    tgctgcTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCACCGTCTTTTg  >  1:1059128/1‑76 (MQ=255)

                                                                    tgctgcTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCACCGGCTTTTg  >  1:4855083/1‑76 (MQ=255)

                                                                    tgctgcTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCCCGGCGGCCGGCGCACCGCCTTTTg  >  2:1465338/1‑76 (MQ=255)

TCCGCTGGCAGCGACGCTGGCTTCACCGGATAAACGCGGCAAAGTGGTTGGCACTATTATGAGCGGTCTGCTGTTGGGGATCTTGCTGGCACGGACAGTTGCCGGATTGCTGGCGAATCTCGGCGGCTGGCGCACCGTCTTTTG  >  NC_000913/2806689‑2806832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 9 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`