| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,957,548 | 1 bp→GG | intergenic (‑117/‑744) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,957,547 | 1 | . | G | 95.7% | 114.2 / ‑0.7 | 46 | intergenic (‑116/‑745) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base G (18/26); total (19/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
| * | NC_000913 | 3,957,548 | 0 | T | G | 97.8% | 116.6 / NA | 46 | intergenic (‑117/‑744) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base G (18/27); minor base C (1/0); total (19/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑T‑GC‑TCGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGG > NC_000913/3957495‑3957610 ||| aaTTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAggg > 1:2373864/1‑76 (MQ=255) ttGTCAGTCAGGGAGTGGCTGGTAGATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGga < 2:3321418/76‑1 (MQ=255) tGTCAGTCAGGGAGTGGCTGGGACATATTAGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTACCTCCAGGGgag > 1:4168813/1‑76 (MQ=255) cagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGaaa < 1:4356466/76‑1 (MQ=255) tcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACt < 1:3855424/76‑1 (MQ=255) agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAAccta < 1:4707900/76‑4 (MQ=255) gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAggg < 2:4554110/76‑1 (MQ=255) gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAggg > 1:3794618/1‑76 (MQ=255) aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGc < 2:2121655/76‑1 (MQ=255) aGTGGCTGGGACATATATGGCAAAAACCCGGAAAAACC‑CGGCTTCGCAGGTCCCTCCAGGGGAGAAAAATTAGGGc > 1:3217191/1‑76 (MQ=255) gTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGcc < 1:3110394/76‑1 (MQ=255) gTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGcc > 1:2666640/1‑76 (MQ=255) tGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAg > 1:3946159/1‑71 (MQ=255) tGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAg < 2:3946159/71‑1 (MQ=255) tGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCct > 2:3268205/1‑76 (MQ=255) tGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCct < 2:2843061/76‑1 (MQ=255) tGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCct < 2:1905488/76‑1 (MQ=255) ggCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCctc < 1:744419/76‑1 (MQ=255) gCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCctct < 2:3803222/76‑1 (MQ=255) tGGTACATATATGGCAAGAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTAt < 2:3761809/76‑1 (MQ=255) gctACATATATGGCAAAAGCACGGAAAATCCGG‑GCGTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATg > 2:2490405/3‑76 (MQ=255) gTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg < 2:704951/76‑1 (MQ=255) gTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg > 2:1560184/1‑76 (MQ=255) gTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATgg > 1:4823847/1‑76 (MQ=255) tACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATggg > 2:4790288/1‑76 (MQ=255) tACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATggg > 1:4058316/1‑76 (MQ=255) atatctGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTGAGGGCCTCTATGGGCTa > 2:3075676/1‑76 (MQ=255) atatatGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTa < 1:1969954/76‑1 (MQ=255) tatatGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTACGGCCTCTATGGGCTAc > 2:2405603/1‑76 (MQ=255) atatGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa < 1:3861387/76‑1 (MQ=255) atGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa < 1:2297354/76‑1 (MQ=255) tGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaacg > 2:4538089/1‑74 (MQ=255) ggCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt < 1:17239/76‑1 (MQ=255) gCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc < 2:3031416/76‑1 (MQ=255) gCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc < 2:61027/76‑1 (MQ=255) aaaaGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt < 2:270808/76‑1 (MQ=255) aaaaGCCCGGAAAATCCGG‑GCTTCGCAGGGCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTGAt < 2:279557/76‑1 (MQ=255) aaGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa > 2:4742274/1‑76 (MQ=255) aaGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa < 2:1049561/76‑1 (MQ=255) aGCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt < 2:666846/76‑1 (MQ=255) gCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc < 2:3719838/76‑1 (MQ=255) gCCCGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc < 2:2373863/76‑1 (MQ=255) cccGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg > 1:181306/1‑76 (MQ=255) cccGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg > 2:4770214/1‑76 (MQ=255) cccGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg > 1:3479906/1‑76 (MQ=255) cGGAAAATCCGG‑GCTTCGCAGGTCCCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg < 1:3236507/76‑1 (MQ=255) ||| AATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑T‑GC‑TCGCAGGT‑CCTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGG > NC_000913/3957495‑3957610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |