| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,007,718 | 2 bp→CG | coding (943‑944/1023 nt) | pldB → | lysophospholipase L(2) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,007,718 | 0 | G | C | 99.0% | 266.9 / ‑5.6 | 102 | A315R (GCC→CGC) | pldB | lysophospholipase L(2) |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base C (40/61); minor base A (1/0); total (41/61) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
| * | NC_000913 | 4,007,719 | 0 | C | G | 99.0% | 268.9 / NA | 102 | A315R (GCC→CGC) | pldB | lysophospholipase L(2) |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base G (41/60); minor base T (0/1); total (41/61) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 102 total aligned reads displayed.
TCGAAGGAGGACGGCCGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGGCCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCAGCGGAAACCGCTCTA > NC_000913/4007650‑4007787 || tCGAAGGAGGACGGCCGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGt > 1:4363265/1‑76 (MQ=255) cGAAGGGGGACGGCCGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTc < 1:2520997/76‑1 (MQ=255) cGAAGGAGGACGGCCGTTGGTAATGAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTc < 1:2766281/76‑1 (MQ=255) gAAGGAGGACGGCCGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTcg < 1:3530069/76‑1 (MQ=255) gAAGGAGGACGGCCGTTGGTAAGTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTcg < 2:156443/76‑1 (MQ=255) aaGGAGGACGGCCGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTcgc < 1:3461184/76‑1 (MQ=255) aaGGAGGACGGCCGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTcgc < 2:1845072/76‑1 (MQ=255) ggaggaCGGCCGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCgcgc < 2:3057614/76‑1 (MQ=255) ggaggaCGGCCGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCgcgc < 2:568194/76‑1 (MQ=255) ggaggaCGGCCGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCgcgc > 2:3607904/1‑76 (MQ=255) aggaCGGCCGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTc < 1:1609460/76‑1 (MQ=255) ggaCGGCCGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTcc < 1:4535360/76‑1 (MQ=255) ggaCGGCCGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTcc > 1:3890941/1‑76 (MQ=255) aCGGCCGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCAc < 1:3659872/76‑1 (MQ=255) aCGGCCGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCAc > 1:3025128/1‑76 (MQ=255) aCGGCCGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCAc > 2:3936881/1‑76 (MQ=255) cGGCCGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACg < 1:3291673/76‑1 (MQ=255) cggtGGTAATTAAAGGGGCTTACCATGAGATCCGTTTTGAAAAGGACGCAATGAGCACAGTCGCGCTCCACGCTAt > 1:3933008/4‑76 (MQ=255) cGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCAt < 2:2818396/76‑1 (MQ=255) cGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCAt < 1:3612657/76‑1 (MQ=255) cGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCAt < 2:3744663/76‑1 (MQ=255) cGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCAt < 2:1599001/76‑1 (MQ=255) cGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCAt > 1:1933468/1‑76 (MQ=255) cGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCAt < 2:2283959/76‑1 (MQ=255) ggtGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATc < 2:1208621/74‑1 (MQ=255) gTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATc > 2:3508267/1‑76 (MQ=255) ttGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCg > 1:1168995/1‑76 (MQ=255) ttGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCg > 1:1150953/1‑76 (MQ=255) aTTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCCTCGTTGAtt > 2:2049261/1‑76 (MQ=255) aTTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGAtt > 1:2236013/1‑76 (MQ=255) aTTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGAtt > 1:2270285/1‑76 (MQ=255) aTTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGCCGCGCTCCACGCCCTCGTTGAtt > 2:1497409/1‑76 (MQ=255) ttAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCCTCGTTGAttt > 2:2866392/1‑76 (MQ=255) ttAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGAttt > 2:4058039/1‑76 (MQ=255) ttAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGAttt < 1:1682132/76‑1 (MQ=255) tAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGAtttt < 1:360510/76‑1 (MQ=255) aaaGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGAttttt < 2:1401793/76‑1 (MQ=255) aaGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGAtttttt > 2:4545853/1‑76 (MQ=255) aGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTc < 2:4865463/76‑1 (MQ=255) aGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTc < 2:4720992/76‑1 (MQ=255) ggTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCa > 2:3677176/1‑76 (MQ=255) gTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCaa < 2:1797469/76‑1 (MQ=255) gTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCaa > 1:3205242/1‑76 (MQ=255) cTTACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAg < 2:2563708/76‑1 (MQ=255) ttACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAgg > 1:4115760/1‑76 (MQ=255) tACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGc < 1:2374414/76‑1 (MQ=255) tACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGc > 1:1622718/1‑76 (MQ=255) tACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGc < 2:3067102/76‑1 (MQ=255) tACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGc > 1:1577243/1‑76 (MQ=255) tACCATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGc < 2:225350/76‑1 (MQ=255) ccATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCAt < 2:2416138/76‑1 (MQ=255) ccATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCAt < 2:460807/76‑1 (MQ=255) ccATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCAt > 2:849497/1‑76 (MQ=255) cATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATa < 1:1391552/76‑1 (MQ=255) cATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATa < 1:4058039/76‑1 (MQ=255) cATGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATa < 2:4356610/76‑1 (MQ=255) tGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCACCAGGCATAAc < 1:2472706/76‑1 (MQ=255) tGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAAc > 2:1659261/1‑76 (MQ=255) tGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAAc > 1:4069539/1‑76 (MQ=255) tGAGATCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAAc < 2:425241/76‑1 (MQ=255) tGAGAGCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTCGATTTTTTCAACAGGCATAAc > 2:4627371/1‑76 (MQ=255) gagaTCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACt < 1:266564/76‑1 (MQ=255) agaTCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTc > 2:585249/1‑76 (MQ=255) gaTCCTTTTTGAATAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACCGGCATAACTCa < 1:1394740/76‑1 (MQ=255) gaTCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGCTTTTTTCAACAGGCCTCACTcc > 2:1100767/1‑75 (MQ=255) gaTCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCa > 2:748732/1‑76 (MQ=255) ctCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCTTTGATTTTTTCAACAGGCATAACTCAc < 1:3021220/75‑1 (MQ=255) aTCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCAc > 2:567566/1‑76 (MQ=255) aTCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCAc < 2:3844141/76‑1 (MQ=255) aTCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACACGCATAACTCAc > 2:3584855/1‑76 (MQ=255) aTCCGTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCAc < 2:4331512/76‑1 (MQ=255) tCCTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCAcc < 2:3205242/76‑1 (MQ=255) ccTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCAccc < 2:2270284/76‑1 (MQ=255) ccTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCAccc < 2:2236012/76‑1 (MQ=255) cTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCa > 1:2124131/1‑76 (MQ=255) cTTTTTGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCa < 2:1816834/76‑1 (MQ=255) cTTTTTGAAAAGGACGCAATGCGCTCAATCGCGCTACACGCCATCGTTGATGTTTTAAACAGGCTGAACTcacaca > 2:1301778/1‑76 (MQ=255) tttttGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCAg < 2:4294184/76‑1 (MQ=255) ttttGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCAGc > 1:814327/1‑76 (MQ=255) ttttGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCAGc > 2:2778339/1‑76 (MQ=255) ttttGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCAGc < 2:2574681/76‑1 (MQ=255) ttttGAAAAGGACGCAACGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTATCAACAGGCATAACTCACCCAGc < 2:693774/76‑1 (MQ=255) tttGAAAAGGACGCAACGCGCTCAGTACCGCGCCAAGCCATCGTTGATTGTTTCAACAGGCAGAACGCACCCAgag > 1:1678135/1‑74 (MQ=255) ttGAAAAGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCAcc > 1:1580666/1‑70 (MQ=255) aatgACGCAATGCTCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCAGCGGAAAcc < 2:3253458/73‑1 (MQ=255) aaGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCAGCGGAAAcc < 2:2790252/76‑1 (MQ=255) aaGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCAGCGGAAAcc < 2:445003/76‑1 (MQ=255) aaGGACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGAGTTTTTCAACAGGCATAACTCACCCAGCGGAAAcc < 2:3429358/76‑1 (MQ=255) ggACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCAGCGGAAACCGc < 2:4777539/76‑1 (MQ=255) ggACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCAGCGGAAACCGc > 2:1578168/1‑76 (MQ=255) ggACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCAGCGGAAACCGc < 2:3615649/76‑1 (MQ=255) ggACGCAATGCGCTCAGTCGCGCTCCAAGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCAGCGGAAACCga > 1:957375/1‑75 (MQ=255) gACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCAGCGGAAACCGct < 2:1296186/76‑1 (MQ=255) gACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCAGCGGAAACCGct > 1:3793415/1‑76 (MQ=255) gACGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAAGCATAACTCACCCAGCGGAAACCGct < 2:1160132/76‑1 (MQ=255) gcGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCAGCGGAAACCGctc < 2:268782/75‑1 (MQ=255) aCGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCAGCGGAAACCGctc > 1:2620120/1‑76 (MQ=255) aCGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCAGCGGAAACCGctc < 1:3254332/76‑1 (MQ=255) cGCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCAGCGGAAACCGctct < 2:2363286/76‑1 (MQ=255) gCAATGCGCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCAGCGGAAACCGCTCTa < 1:3221961/76‑1 (MQ=255) || TCGAAGGAGGACGGCCGTTGGTAATTAAAGGTGCTTACCATGAGATCCTTTTTGAAAAGGACGCAATGGCCTCAGTCGCGCTCCACGCCATCGTTGATTTTTTCAACAGGCATAACTCACCCAGCGGAAACCGCTCTA > NC_000913/4007650‑4007787 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |