New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 225915NA (NA)8 (0.420) 5/86 NT NA noncoding (157/2904 nt) rrlH 23S ribosomal RNA
?W3110S.gb = 225926 NA (NA)noncoding (168/2904 nt) rrlH 23S ribosomal RNA

GGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/225838‑225915
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcattaacCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCCGGTTA  <  W3110S.gb/225926‑225860
                                                                                                                                                 
GGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTAT                                                                            >  1:90899/1‑71
 GTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATC                                                                           <  1:580547/71‑1
 GTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTAT                                                                            >  1:526675/1‑70
  TAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCA                                                                          >  1:1879688/1‑71
  TAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCA                                                                          <  1:1845064/71‑1
   AAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCAT                                                                         >  1:765044/1‑71
    AGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATT                                                                        <  1:272351/71‑1
    AGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCAT                                                                         >  1:856596/1‑70
     GGTGATATGAACCGTTGTAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTA                                                                       <  1:1885222/71‑1
       TGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAAC                                                                     >  1:1888846/1‑71
        GATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCAT                                                                         <  1:1844613/66‑1
         ATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATT                                                                        >  1:274438/1‑66
         ATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTAT                                                                            <  1:1823113/62‑1
              AACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTAT                                                                            <  1:955620/57‑1
                 CGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATT                                                                        >  1:1177729/1‑58
                 CGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTAT                                                                            <  1:952481/54‑1
                  GTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCA                                                                          >  1:543479/1‑55
                  GTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCA                                                                          >  1:894966/1‑55
                   TTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAA                                                                      >  1:1909183/1‑58
                   TTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTAT                                                                            <  1:1437053/52‑1
                     ATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAAC                                                                     >  1:1572360/1‑57
                      TAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATT                                                                        <  1:1100960/53‑1
                           GGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACCTATGGATTCAGTTAATGA                                                  <  1:162448/70‑1
                           GGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACCTATGGATTCAGTT                                                       <  1:1034365/65‑1
                           GGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACCTATGGATTCAGTT                                                       <  1:1178370/65‑1
                           GGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTAT                                                                            >  1:1176290/1‑44
                               ATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCA                                                                          <  1:83475/42‑1
                                TTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAAC                                                                     <  1:1260218/46‑1
                                 TTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACCTATGGATTCAGTTAAT                                                    >  1:225960/1‑62
                                 TTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATT                                                                        <  1:1406082/42‑1
                                        TGGGGAAACCCAGTGTGTTTCGACACACTATCATTAACCTATGGATTCAGT                                                        >  1:450965/1‑51
                                        TGGGGAAACCCAGTGTGTTTCGACACACTATCATTAAC                                                                     >  1:1480770/1‑38
                                              AACCCAGTGTGTTTCGACACACTATCATTAACCTATGGATTCAGTTAATGATA                                                >  1:505411/1‑53
                                                     TGTGTTTCGACACACTATCATTAACCTATGGATTCAGTTAATGA                                                  <  1:1782560/44‑1
                                                         TTTCGACACACTATCATTAACCTATGGATTCAGTT                                                       <  1:632813/35‑1
                                                                      TCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCCG      >  1:618137/1‑71
                                                                      TCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCCG      >  1:87496/1‑71
                                                                      TCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCCG      >  1:1784254/1‑71
                                                                      TCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCCG      >  1:1550683/1‑71
                                                                      TCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATC          >  1:494568/1‑67
                                                                      TCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATC          >  1:1571703/1‑67
                                                                      TCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATC          >  1:1331576/1‑67
                                                                      TCATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAA            >  1:89309/1‑65
                                                                       CATTAACCTATGTATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCCGG     >  1:1352349/1‑71
                                                                       CATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCCGG     >  1:600368/1‑71
                                                                       CATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCCGG     >  1:700499/1‑71
                                                                       CATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCCGG     >  1:211743/1‑71
                                                                       CATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCCGG     >  1:1858414/1‑71
                                                                       CATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCCGG     >  1:262695/1‑71
                                                                       CATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCCG      >  1:1444791/1‑70
                                                                       CATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCC       >  1:1856894/1‑69
                                                                       CATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGA              <  1:1713058/62‑1
                                                                       CATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACAATGGGTTTCCCCATTCGGAAATCGCCGG     >  1:2037652/1‑71
                                                                       CATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAAC                                    >  1:468267/1‑40
                                                                        ATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCCGGT    >  1:2087725/1‑71
                                                                        ATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCCG      <  1:1540309/69‑1
                                                                        ATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCG                >  1:229956/1‑59
                                                                        ATTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACA                                   >  1:1377434/1‑40
                                                                         TTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCCGGTT   <  1:1830958/71‑1
                                                                         TTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCCGGT    >  1:154838/1‑70
                                                                         TTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAA            <  1:46694/62‑1
                                                                         TTAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTG                              <  1:1125814/44‑1
                                                                         TTAACCTATGGATTCAGTTAATGATAGTGTGTCGA                                       <  1:194525/35‑1
                                                                         TTAACCTATGGATTCAGTTAATGATAGTGTGTCGA                                       <  1:344966/35‑1
                                                                          TAACCTATGGATTCAGTTAATGATAGTGTGTCGAACCACACTGGGTTTCCCCATTCGGAAAT           >  1:2086292/1‑62
                                                                          TAACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCCGGTTA  >  1:582009/1‑71
                                                                           AACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCCGGTTA  >  1:1007117/1‑70
                                                                           AACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGC        <  1:1046183/64‑1
                                                                           AACCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGG                             >  1:1267006/1‑43
                                                                           AACCTATGGATTCAGTTAATGATAGTGTGTCGAAA                                     >  1:1886199/1‑35
                                                                             CCTATGGATTCAGTTAATGATAGTGTGTCGAAACAC                                  <  1:1094963/36‑1
                                                                             CCTATGGATTCAGTTAATGATAGTGTGTCGAAACAC                                  <  1:197042/36‑1
                                                                                                                                                 
GGTAAGGTGATATGAACCGTTATAACCGGCGATTTCCGAATGGGGAAACCCAGTGTGTTTCGACACACTATCATTAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/225838‑225915
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcattaacCTATGGATTCAGTTAATGATAGTGTGTCGAAACACACTGGGTTTCCCCATTCGGAAATCGCCGGTTA  <  W3110S.gb/225926‑225860

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.