New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	2018571 =	1 (0.040)	16 (0.750)	15/96	NT	94.4%	coding (567/687 nt)	fliH	flagellar biosynthesis protein
	?	W3110S.gb	2519723 =	NA (NA)					intergenic (+33/‑54)	nupC/insL	nucleoside (except guanosine) transporter/predicted transposase

AGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/2018627‑2018571 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC  >  W3110S.gb/2519723‑2519791                                                                                                                                AGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACT                                                          <  1:1568273/70‑1   ATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACT                                                          >  1:1554023/1‑68    TCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAA                                                       <  1:286528/70‑1             TCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAG                                                                  <  1:495048/50‑1                GCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATT                                          <  1:38481/71‑1                   GAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACG                                       <  1:1542759/71‑1                        TTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGA                                  >  1:1106730/1‑71                                     GGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGT                     <  1:45928/71‑1                                     GGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGG                                              <  1:376929/46‑1                                     GGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTA                                                        >  1:165454/1‑36                                      GATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTA                                            >  1:1267865/1‑47                                      GATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTA                                            >  1:305302/1‑47                                          GAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGA                <  1:914049/71‑1                                          GAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCG                 <  1:1414965/70‑1                                          GAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGG                                              >  1:616740/1‑41                                            GGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGA                >  1:419030/1‑69                                                 GGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATT          <  1:1171308/70‑1                                                    TCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGT                     <  1:1860156/56‑1                                                    TCGCCCATAAGCGCTAACTCAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAAT           <  1:1959124/66‑1                                                     CGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCT     >  1:998753/1‑71                                                      GCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCT     >  1:2006194/1‑70                                                      GCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCC                  <  1:487078/57‑1                                                       CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGA             <  1:599819/61‑1                                                        CCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGAT                            <  1:608940/45‑1                                                         CATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC  >  1:1862417/1‑70                                                         CATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATG              >  1:1925422/1‑58                                                         CATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAAC                       >  1:1862850/1‑49                                                         CATAAGCGCTAACTTAAGGGTTGTGGTATTACCCCTGATATGATTTAACGTGC                   <  1:1979723/53‑1                                                                                                                                AGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/2018627‑2018571 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCAC  >  W3110S.gb/2519723‑2519791

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.