| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 25 (1.120) | 20/100 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
CATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2172375‑2172308‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTC < W3110S.gb/3920281‑3920214 CATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTG > 1:2044052/1‑71 TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTC < 1:645066/70‑1 GTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA > 1:808687/1‑70 CTGACTGAGAGTTTTCTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT < 1:106834/56‑1 AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGT > 1:1530103/1‑51 GTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCA < 1:179808/70‑1 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAt > 1:1970670/1‑70 TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTG < 1:1919890/44‑1 TCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTG < 1:1920372/41‑1 CACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGat > 1:101413/1‑40 ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATG < 1:1748630/70‑1 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCG < 1:1082350/42‑1 CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTG < 1:328327/38‑1 TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACG > 1:1837716/1‑65 TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTAC > 1:2091592/1‑44 GCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTAC < 1:1140367/38‑1 CGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACA > 1:1324075/1‑67 GTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCT < 1:755117/71‑1 TCCACTATTGCTGGGTAAGATCAGTGTTCTTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTG < 1:518792/71‑1 TCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTG < 1:2019812/71‑1 TCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTG < 1:532802/71‑1 CTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACG < 1:1989035/71‑1 CTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGAC > 1:1600754/1‑70 TATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTG > 1:1989242/1‑66 TTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAATGATGGTTACAAATCTCTGGACGA < 1:1572807/69‑1 GCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGT > 1:192707/1‑71 GCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCA > 1:9176/1‑40 GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAG > 1:382271/1‑70 TAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAA < 1:1622778/37‑1 AAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAG > 1:1312718/1‑71 AAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAAT > 1:1532161/1‑50 AGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGT < 1:450912/71‑1 AGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACG > 1:1653869/1‑37 GATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGA < 1:1425017/58‑1 TCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATC < 1:1054492/47‑1 TCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATC < 1:30497/47‑1 CAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTC > 1:938924/1‑70 AGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTA > 1:148968/1‑39 CATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/2172375‑2172308‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTC < W3110S.gb/3920281‑3920214 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |