| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | W3110S.gb | 3,746,913 | Δ1,199 bp | 100% | [tnaB]–[tnaB] | [tnaB], insH, [tnaB] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 3746913–3748110 | 3748111 | 2–1199 | 32 [0] | [0] 30 | [tnaB]–[tnaB] | [tnaB],insH,[tnaB] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3746912 | 0 (0.000) | 27 (1.290) | 23/94 | NT | 100% | coding (71/447 nt) | tnaB | tryptophan transporter of low affinity |
| ? | W3110S.gb | 3748112 = | 0 (0.000) | coding (871/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
AGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3746846‑3746912‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGATT > W3110S.gb/3748112‑3748168 AGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGA > 1:1912130/1‑70 CAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAG > 1:1385975/1‑69 GATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGG > 1:42626/1‑71 AATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAG < 1:1361018/54‑1 TCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGC > 1:42940/1‑67 CGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAA > 1:1669188/1‑70 GAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACT > 1:1097663/1‑71 GAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACAC > 1:2082609/1‑57 CAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGA > 1:210188/1‑71 CAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAG < 1:1412457/47‑1 CCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATG < 1:2018902/71‑1 CCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGA < 1:394810/66‑1 AGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCC > 1:636209/1‑71 AGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGA > 1:1018332/1‑41 GCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCG < 1:370720/71‑1 CGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTA < 1:956661/37‑1 CGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTA < 1:273272/37‑1 GTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAG > 1:1559539/1‑50 GTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAGAG > 1:1382470/1‑39 CACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGT > 1:1734959/1‑71 ACCAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACA > 1:445783/1‑38 CAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTG > 1:1273921/1‑71 CAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAA < 1:999919/57‑1 CAAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGG > 1:1811688/1‑44 AAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTC < 1:2108102/51‑1 AAAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTC < 1:2073297/51‑1 AAGAACGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGT < 1:1142579/71‑1 CGAACTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGT < 1:28924/61‑1 CTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAA < 1:420189/71‑1 CTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAA < 1:931785/71‑1 CTGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGT > 1:167320/1‑52 TGGCAACAGCTAAGTTAGAGAACACCAGCAGGCAA < 1:1183813/35‑1 GCAACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAA > 1:1512948/1‑43 AACAGCTAAGTTAGAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGATT < 1:1807776/71‑1 AGGTCCGCCAGATAATCGAACAACCCCAGCGTGACACCAAAGAACGAACTGGCAACAGCTAAGTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3746846‑3746912‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagAGAACACCAGCAGGCAAAACTCGATAATGCCGTGCTGTTTGGTGCCGAGGAACGATT > W3110S.gb/3748112‑3748168 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |