| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4212589 = | NA (NA) | 3 (0.140) | 3/94 | NT | NA | noncoding (934/1542 nt) | rrsE | 16S ribosomal RNA |
| ? | W3110S.gb | 4212609 = | NA (NA) | noncoding (954/1542 nt) | rrsE | 16S ribosomal RNA | |||||
CTTCCGTGGATGTCAAGACCAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/4212661‑4212589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAA > W3110S.gb/4212609‑4212677 CTTCCGTGGATGTCAAGACCAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTG < 1:1663158/71‑1CTTCCGTGGATGTCAAGACCAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTG < 1:2038554/71‑1CTTCCGTGGATGTCAAGACCAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTG < 1:1782221/71‑1 CCGTGGATGTCAAGACCAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTG < 1:505780/70‑1 CCGTGGATGTCAAGACCAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTG < 1:1578125/70‑1 GATGTCAAGACCAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTG < 1:1483917/65‑1 CCAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTG < 1:2044042/55‑1 GGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTG > 1:542400/1‑52 GTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTG < 1:1361912/51‑1 GTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGT < 1:1927538/50‑1 TTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGT < 1:2068703/41‑1 CGCGTTGCATCGAATTAAACCACATGCTCCACCGCTT < 1:97675/37‑1 AACCACATGCTCCACCGCTTGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACATCCAC > 1:1404476/1‑71 ACATGCTCCACCGCTTGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACATCCACGG > 1:2025025/1‑69 CTCCACCGCTTATGGTTTAATTCGATGCAACGCGAAGAACCTTA > 1:1344128/1‑44 TGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGAT > 1:637054/1‑68 TGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTT > 1:371583/1‑43 TGTGGTTTAATTCGATGCAACGCGAAGAACCTTAACTGGTCTTGACATCCACGGAAGTTTTCAGAGAT > 1:748546/1‑68 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAG > 1:740482/1‑70 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACATCCA < 1:1830672/50‑1 GTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGAC < 1:1693712/45‑1 TGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAA > 1:1511912/1‑71 TGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGA < 1:1586463/70‑1 TGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACATCCACGGAAGTTTTC < 1:167069/60‑1 TGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACATC < 1:1954009/47‑1 CTTCCGTGGATGTCAAGACCAGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/4212661‑4212589‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAA > W3110S.gb/4212609‑4212677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |