| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1499413 | 31 (1.360) | 3 (0.150) | 3/92 | NT | 9.5% | coding (814/1626 nt) | mdoD | glucan biosynthesis protein, periplasmic |
| ? | W3110S.gb | = 1499426 | 29 (1.410) | coding (827/1626 nt) | mdoD | glucan biosynthesis protein, periplasmic | |||||
GAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGATGTGCGATACAATTCATCCGCAAATTCATGACTCTGATCGTCTGTC > W3110S.gb/1499347‑1499483 | gAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTg < 1:834623/71‑1 (MQ=255) aaaTCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCg < 1:2059220/71‑1 (MQ=255) aaTCACCTGTATGCGCGCGAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCg > 1:1543439/1‑70 (MQ=255) aCCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTAc > 1:1887786/1‑70 (MQ=255) cgcAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCg < 1:1321081/71‑1 (MQ=255) cgcAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCg < 1:1323582/71‑1 (MQ=255) aaaGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGAt > 1:1385832/1‑71 (MQ=255) aaGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGAtg > 1:442833/1‑71 (MQ=255) aGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAttagtaccgcagctgaac > 1:1507302‑M1/1‑44 (MQ=255) aGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGAtgt > 1:567411/1‑71 (MQ=255) gACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCgg < 1:1066483/50‑1 (MQ=255) aCATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGATGTGc > 1:429703/1‑71 (MQ=255) aaaCAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGATGTGCGATa > 1:1582231/1‑70 (MQ=255) cAGCTGGGCATTGCGCCGATGACCAGTATGTTCAttagtaccg > 1:160412‑M1/1‑34 (MQ=255) aGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGATGTGCGa < 1:434328/64‑1 (MQ=255) gCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGa < 1:1749366/56‑1 (MQ=255) gggCATTGCGCCGATGACCAGTATGTTCAttagtaccgc < 1:432036‑M1/39‑11 (MQ=255) ggCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGATGTGCGATACAATTCAt < 1:1742905/69‑1 (MQ=255) ggCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGATGTGCGATACAATTCAt < 1:2100104/69‑1 (MQ=255) ggCATTGCGCCGATGACCAGTATGTTCACCTGCGGTACTAATGAACGTCGGATGTGCGATACAATTCAt < 1:1056773/69‑1 (MQ=255) aTTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGATGTGCGATACAATTCATCCGCa < 1:1170493/71‑1 (MQ=255) gcgcCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGATGTGCGATACAATTCATCCGCAAAt > 1:1370976/1‑71 (MQ=255) gcgcCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGATGTGCGATACAATTCATCCGCAAAt > 1:1363303/1‑71 (MQ=255) gcCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGATGTGCGATACAATTCATCCGCAAAtt < 1:193531/70‑1 (MQ=255) ccGATGACCAGTATGTTCAGCTGCGGTACTAATGAACg < 1:1732001/38‑1 (MQ=255) ccGATGACCAGTATGTTCAGCTGCGGTACTAATGAACg < 1:1393191/38‑1 (MQ=255) ccGATGACCAGTATGTTCAGCTGCGGTACTAATGAACg < 1:1372818/38‑1 (MQ=255) cGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGATGTGCGATACAATTCATCCGCAAAttaa > 1:1336557/1‑68 (MQ=255) gATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGATGTGCGATACAATTCATCCGCAAATTc > 1:243111/1‑68 (MQ=255) aTGACCAGTATGTTCAGCTGCTGTACTAATGAACGTCGGATGTGCGATACAATTCATCCGCAAATTCATg > 1:1799806/1‑70 (MQ=255) aTGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGATGTGCGATACAATTCATCCGCAAATTCATGa > 1:2035560/1‑71 (MQ=255) tGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGATGTGCGATACAATTCATCCGCAAATTCAt > 1:1048378/1‑68 (MQ=255) gTATGTTCAGCTGCGGTACTAATGAACGTCGGATGTGCGATACAATTCATCCGCAAATTCATGACTCTGAt > 1:1830848/1‑71 (MQ=255) tATGTTCAGCTGCGGTACTAATGAACGTCGGATGTGCGATACAATTCAt < 1:779505/49‑1 (MQ=255) tATGTTCAGCTGCGGTACTAATGAACGTCGGATGTGCGATACAATTCATc > 1:1428138/1‑50 (MQ=255) gTTCAGCTGCGGTACTAAtgaacatactggtcatcggcgcaatgcccagctgtttaatgtct > 1:1507302‑M2/1‑18 (MQ=255) ttCAGCTGCGGTACTAATGAACGTCGGATGTGCGATACAATTCATCCGCAAATTCATGACTCTGATCGTCt < 1:1386711/71‑1 (MQ=255) ttCAGCTGCGGTACTAATGAACGTCGGATGTGCGATACAATTCATCCGCAAATTCATGACTCTGATCGTCt > 1:720404/1‑71 (MQ=255) ttCAGCTGCGGTACTAATGAACGTCGGATGTGCGATACAATTCATCCGCAAATTCATGACTCTGATCGTCt < 1:1384384/71‑1 (MQ=255) aGCTGCGGTACTAATGAACGTCGGATGTGCGATACAAt > 1:1066018/1‑38 (MQ=255) aGCTGCGGTACTAATGAACGTCGGATGTGCGATACAATTCATCCGCAAATTCATGACTCTGATCGTCTGt < 1:988790/70‑1 (MQ=255) aGCTGCGGTACTAATGAACGTCGGATGTGCGATACAATTCATCCGCAAATTCATGACTCTGATCGTCTGTc < 1:50513/71‑1 (MQ=255) | GAAAATCACCTGTATGCGCGCAAAGACATTAAACAGCTGGGCATTGCGCCGATGACCAGTATGTTCAGCTGCGGTACTAATGAACGTCGGATGTGCGATACAATTCATCCGCAAATTCATGACTCTGATCGTCTGTC > W3110S.gb/1499347‑1499483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |