| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 71265 | 19 (0.830) | 32 (1.940) +AGGGTCCCTAAGTC |
23/74 | NT | 77.2% | coding (879/879 nt) | araC | DNA‑binding transcriptional dual regulator |
| ? | W3110S.gb | 3464879 = | 7 (0.310) | intergenic (‑255/+46) | murB/rrfB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding/5S ribosomal RNA | |||||
CGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTACTC > W3110S.gb/3464811‑3464945 | ttccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTa < 1:1756070‑M2/2‑1 (MQ=255) tccgtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTa > 1:1609946‑M2/68‑69 (MQ=255) gtgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:662239‑M2/7‑1 (MQ=255) tgccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:1762905‑M2/8‑1 (MQ=255) gccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa > 1:27630‑M2/63‑70 (MQ=255) ccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTaaaa > 1:2092731‑M2/62‑66 (MQ=255) ccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg > 1:698900‑M2/62‑68 (MQ=255) ccggttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa > 1:691553‑M2/62‑69 (MQ=255) gttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACg < 1:1918249‑M2/7‑1 (MQ=255) gttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGc < 1:422217‑M2/13‑1 (MQ=255) ttgtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc < 1:1589354‑M2/14‑1 (MQ=255) gtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTa < 1:1823150‑M2/2‑1 (MQ=255) gtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTa < 1:177879‑M2/2‑1 (MQ=255) gtgaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGcc > 1:585595‑M2/56‑69 (MQ=255) gaagaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGt > 1:2010611‑M2/54‑71 (MQ=255) agaaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtct > 1:2092380‑M2/52‑52 (MQ=255) aaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCttt > 1:278018‑M2/50‑71 (MQ=255) aaaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCttt > 1:692331‑M2/50‑71 (MQ=255) ccGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc > 1:906015/1‑71 (MQ=32) ccGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 1:97438/71‑1 (MQ=32) aaaagtgaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTc > 1:1220404‑M2/49‑71 (MQ=255) gcggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGAc > 1:1200763/1‑71 (MQ=34) gaatgatgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGa < 1:45687‑M2/25‑1 (MQ=255) atgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCttt < 1:333907‑M2/22‑1 (MQ=255) atgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCttt < 1:1417296‑M2/22‑1 (MQ=255) atgtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt < 1:1009571‑M2/33‑1 (MQ=255) gtagccgtcaagttgtcataaagggtccctaagtcTAAAACGa < 1:1619924‑M2/8‑1 (MQ=255) gtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCttt < 1:1285191‑M2/35‑1 (MQ=255) gtagccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTc > 1:1921210‑M2/36‑71 (MQ=255) gccgtcaagttgtcataaagggtccctaagtcTAAAACGaa > 1:1557704‑M2/33‑41 (MQ=255) ccgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGttt < 1:255840‑M2/40‑1 (MQ=255) cgtcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGttt < 1:297837‑M2/40‑1 (MQ=255) tcaagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTc < 1:998851‑M2/36‑1 (MQ=255) caagttgtcataaagggtccctaagtcTAAAACGaaa > 1:1914178‑M2/28‑37 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt > 1:527941‑M2/27‑71 (MQ=255) aagttgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt > 1:1271422‑M2/27‑71 (MQ=255) agagCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAttt > 1:951358/1‑70 (MQ=35) agCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGcc > 1:509970/1‑55 (MQ=35) tgtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTtgacc > 1:1743281‑M2/23‑69 (MQ=255) gtcataaagggtccctaagtcTAAAACGAAAGGCCCa > 1:934057‑M2/22‑37 (MQ=255) gtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCttt > 1:1958262‑M2/22‑56 (MQ=255) gtcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATttgaccg > 1:482221‑M2/22‑68 (MQ=255) tcataaagggtccctaagtcTAAAACGAAAGGCCCAGTCt < 1:874259‑M2/20‑1 (MQ=255) cACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTgg > 1:1268396/1‑71 (MQ=34) aaagggtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGAc > 1:1256021‑M2/17‑42 (MQ=255) aCCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTgg > 1:1377848/1‑70 (MQ=35) gtccctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTtgacc < 1:29964‑M2/49‑3 (MQ=255) cctaagtcTAAAACGAAAGGCCCAGTCTTTCGACTGAGCCt < 1:14019‑M2/33‑1 (MQ=255) tAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTActc > 1:749432/1‑67 (MQ=35) | CGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGCAGTTCCCTACTC > W3110S.gb/3464811‑3464945 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |