| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 236798 | 23 (1.010) | 43 (4.010) +TTTAATATCAGTAAACCGGACATAACC |
27/48 | NT | 78.2% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | W3110S.gb | 4124504 = | 28 (1.230) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
Only 100 of 123 total aligned reads displayed.
AGTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGG > W3110S.gb/4124435‑4124573 | ctggtgcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccc > 1:587517‑M2/70‑70 (MQ=255) tggtgcagaagaaaggcggaatttgcctctggcgagcataatttaatatcagtaaaccggacataaccCAt > 1:1489496‑M2/69‑71 (MQ=255) gTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCAt < 1:1157324/71‑1 (MQ=255) gTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCAt < 1:363675/71‑1 (MQ=255) gTTGCCTGAAGCGCTGGATGCTGT‑GGAGCTTTCTCCACAGGCGGAGAAGGTGTAATTAGTTAGTCAGCATg < 1:1874408/71‑1 (MQ=255) gtgcagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATg > 1:94881‑M2/67‑70 (MQ=255) cagaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATgaa > 1:1458941‑M2/64‑69 (MQ=255) gaagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATg < 1:1090413‑M2/4‑1 (MQ=255) aagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaa > 1:1729297‑M2/61‑70 (MQ=255) aagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaa > 1:1848741‑M2/61‑70 (MQ=255) aagaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaa < 1:248370‑M2/10‑1 (MQ=255) aaGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATgaagaa < 1:1527805/69‑1 (MQ=255) aaGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaa < 1:1147986/70‑1 (MQ=255) agaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa < 1:980039‑M2/12‑1 (MQ=255) agaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa < 1:1171112‑M2/12‑1 (MQ=255) aGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGaaaaa < 1:1383006/71‑1 (MQ=255) gaaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAAt > 1:1888304‑M2/59‑71 (MQ=255) aaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATc < 1:1253213‑M2/14‑1 (MQ=255) aaaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATc < 1:1567854‑M2/14‑1 (MQ=255) aaggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATcg > 1:328790‑M2/57‑71 (MQ=255) cTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCAt < 1:677757/58‑1 (MQ=255) aggcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATcgc > 1:1599510‑M2/56‑71 (MQ=255) gcggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCgcgc < 1:789739‑M2/18‑1 (MQ=255) cggaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCt > 1:1927078‑M2/53‑71 (MQ=255) tGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCttt < 1:1504815/71‑1 (MQ=255) gaagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtt < 1:20058‑M2/20‑1 (MQ=255) aagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATga > 1:115799‑M2/50‑54 (MQ=255) aagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttt > 1:379495‑M2/50‑71 (MQ=255) aagttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttt > 1:1588147‑M2/50‑71 (MQ=255) cTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCttttt > 1:556617/1‑71 (MQ=255) cTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCttttt > 1:1074414/1‑71 (MQ=255) cTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCtttt < 1:1554190/70‑1 (MQ=255) agttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCttttt < 1:688711‑M2/23‑1 (MQ=255) gttgcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttttt > 1:358175‑M2/48‑71 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTg > 1:1920781‑M2/45‑69 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:600455‑M2/26‑1 (MQ=255) gcctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa < 1:1490031‑M2/26‑1 (MQ=255) aggAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGAGCTTTTTTg > 1:1444116/2‑69 (MQ=255) ggAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGaa < 1:2104856/70‑1 (MQ=255) ggAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGaa < 1:1887647/70‑1 (MQ=255) ggAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAg > 1:1599751/1‑71 (MQ=255) cctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGaaaaa < 1:583639‑M2/12‑1 (MQ=255) cctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa < 1:1659376‑M2/27‑1 (MQ=255) cctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa < 1:733118‑M2/27‑1 (MQ=255) ctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGt < 1:1324479‑M2/29‑1 (MQ=255) ctctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGt < 1:1903243‑M2/29‑1 (MQ=255) gCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTg > 1:13943/1‑70 (MQ=255) ctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTgg > 1:1854345‑M2/41‑71 (MQ=255) ctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTgg > 1:439486‑M2/41‑71 (MQ=255) ctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTgg > 1:898948‑M2/41‑71 (MQ=255) ctggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTgg > 1:1442837‑M2/41‑71 (MQ=255) ggcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTggg > 1:2024270‑M2/39‑70 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAAt > 1:1746660‑M2/38‑50 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGc > 1:680206‑M2/38‑70 (MQ=255) gcgagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa < 1:1516407‑M2/34‑1 (MQ=255) gagcataatttaatatcagtaaagcggacataaccCATGAAGAAAAATc < 1:383255‑M2/14‑1 (MQ=255) gagcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgg < 1:1029794‑M2/36‑1 (MQ=255) agcataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtttttt < 1:1187157‑M2/24‑1 (MQ=255) cataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTCGGCAggggg > 1:1466330‑M2/33‑71 (MQ=255) ataatttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggggg < 1:1803340‑M2/39‑1 (MQ=255) taatttaatatcagtaaaccggacataaccCATGAAGAAAAATCCCGCTTTTTTGAAGTGGGCAGGGGGc > 1:576363‑M2/31‑70 (MQ=255) caGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggggtc > 1:334064/1‑68 (MQ=255) caGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc < 1:1629400/70‑1 (MQ=255) aatttaatatcagtaaaccggacataaccCATGAAGaaa < 1:576591‑M2/10‑1 (MQ=255) atttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgg > 1:73526‑M2/29‑64 (MQ=255) tttaatatcagtaaaccggacataaccCATGAAGAAGAATCGCGCTTTTTTGaa > 1:1167722‑M2/28‑54 (MQ=255) tttaatatcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAg > 1:1748182‑M2/28‑70 (MQ=255) atatcagtaaaccggacataaccCATGAAGAAAAATCGCGCtt < 1:295290‑M2/20‑1 (MQ=255) tcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa < 1:1919511‑M2/27‑1 (MQ=255) tcagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCt > 1:1409699‑M2/21‑71 (MQ=255) ggTGTAATTAGTTAGTCAGCATGAAGAAAAATcgcg < 1:365236/36‑1 (MQ=255) cagtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAg > 1:641199‑M2/20‑47 (MQ=255) tgtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCtttttt < 1:841370/41‑1 (MQ=255) tgtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGaa > 1:420476/1‑44 (MQ=255) gtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGaa < 1:1936980‑M2/27‑1 (MQ=255) gtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgg > 1:526904‑M2/18‑53 (MQ=255) gtaaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCt > 1:203105‑M2/18‑71 (MQ=255) gtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgggg > 1:1016302/1‑54 (MQ=255) gtAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCtt > 1:1489608/1‑71 (MQ=255) aaaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCtt > 1:604980‑M2/16‑70 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGa > 1:882841‑M2/15‑40 (MQ=255) aaccggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtga > 1:527038‑M2/15‑71 (MQ=255) ttagttagTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatg < 1:1250799/71‑1 (MQ=255) ttagttagTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatg < 1:975461/71‑1 (MQ=255) tagttagtCAGCATGAAGAAAAATCGCGCTTTTTTGaa > 1:514561/1‑38 (MQ=255) tagttagtCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatga > 1:1768381/1‑71 (MQ=255) cggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCa > 1:2059935‑M2/12‑45 (MQ=255) cggacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATcc < 1:1444475‑M2/48‑1 (MQ=255) gacataaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGata < 1:290537‑M2/62‑1 (MQ=255) tCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa > 1:1387548/1‑71 (MQ=255) aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAgg < 1:475644‑M2/36‑1 (MQ=255) aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCATGGGGCAAGTATccc > 1:224688‑M2/5‑53 (MQ=255) aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa > 1:63454‑M2/5‑71 (MQ=255) aaccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTaaa > 1:754608‑M2/5‑71 (MQ=255) ccCATGAAGAAATATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTtgatg < 1:264729‑M2/59‑1 (MQ=255) ccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAggg > 1:296093‑M2/3‑39 (MQ=255) ccCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACg < 1:313031‑M2/69‑1 (MQ=255) cCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGc < 1:1944357‑M2/40‑1 (MQ=255) cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATc > 1:106852/1‑47 (MQ=255) cATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACgg > 1:1394818/1‑70 (MQ=255) | AGTTGCCTGAAGCGCTGGATGCTGTCGGAGCTTTCTCCACAGCCGGAGAAGGTGTAATTAGTTAGTCAGCATGAAGAAAAATCGCGCTTTTTTGAAGTGGGCAGGGGGCAAGTATCCCCTGCTTGATGATATTAAACGG > W3110S.gb/4124435‑4124573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |