| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 566000 = | NA (NA) | 33 (1.450) | 24/102 | NT | 100% | intergenic (+90/‑56) | ybcD/insE | DLP12 prophage region; ECK0532:JW0527:b4508; predicted replication protein fragment/IS3 element protein InsE |
| ? | W3110S.gb | = 576913 | 0 (0.000) | coding (78/498 nt) | ybcS | predicted lysozyme | |||||
ATCATTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA > W3110S.gb/576844‑576979 | cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTg > 1:1754651‑M2/68‑71 (MQ=255)cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTg > 1:1799250‑M2/68‑71 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACt < 1:1578770‑M2/3‑1 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGccc > 1:627661‑M2/63‑70 (MQ=255) acaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTg < 1:808603‑M2/13‑1 (MQ=255) acaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTg < 1:1236850‑M2/13‑1 (MQ=255) aaaGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttaccc > 1:1121934‑M2/1‑60 (MQ=255) gCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagc > 1:1746298‑M2/1‑57 (MQ=255) gCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagc > 1:348252‑M2/1‑57 (MQ=255) gCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagc > 1:1900601‑M2/1‑57 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAAc > 1:1755298‑M2/53‑70 (MQ=255) gaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACg < 1:1976221‑M2/19‑1 (MQ=255) ttGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaata > 1:1340854‑M2/1‑53 (MQ=255) ttGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaata > 1:770782‑M2/1‑53 (MQ=255) ttGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttaccca < 1:112393‑M2/65‑13 (MQ=255) tgctgctgcTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatag < 1:2097517‑M2/71‑20 (MQ=255) tgctgctgcTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatc < 1:886321‑M2/57‑6 (MQ=255) ctgctATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtgg > 1:790095‑M2/1‑47 (MQ=255) tgctATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggaca < 1:729730‑M2/71‑26 (MQ=255) tgctATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgat < 1:599523‑M2/50‑5 (MQ=255) ctATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacg < 1:2076520‑M2/71‑28 (MQ=255) acctcgcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGa < 1:635212‑M2/29‑1 (MQ=255) tATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtg < 1:1587223‑M2/45‑3 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAg < 1:1231033‑M2/31‑1 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGgtg < 1:594434‑M2/34‑1 (MQ=255) gtggCGGAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggct < 1:545804‑M2/70‑33 (MQ=255) cttaggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTc < 1:623622‑M2/36‑1 (MQ=255) aggcctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAg < 1:582575‑M2/38‑1 (MQ=255) ggAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtga > 1:320128‑M2/1‑33 (MQ=255) gAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgag > 1:1490455‑M2/1‑32 (MQ=255) gAGCAATTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagt < 1:1714581‑M2/68‑37 (MQ=255) ctgtgtccatattacgtgggtaggatcaACTGGCCCAAGTGGTaa > 1:1248792‑M2/29‑45 (MQ=255) aaTTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaa > 1:971758‑M2/1‑28 (MQ=255) aTTGCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggct > 1:1498615‑M2/1‑27 (MQ=255) gCTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct < 1:2046973‑M2/71‑48 (MQ=255) cTATAGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctc > 1:1542191‑M2/1‑23 (MQ=255) cTATAGCATCAGTGTTAATCACTtgatcttacccagc > 1:214370‑M2/1‑23 (MQ=255) atattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCt < 1:1916977‑M2/26‑1 (MQ=255) atattacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcatacca > 1:295178‑M2/21‑68 (MQ=255) tattacgtgggtaggatcaACTGGCCCAAGTGGTaa > 1:588357‑M2/20‑36 (MQ=255) attacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGt < 1:435090‑M2/24‑1 (MQ=255) attacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACa > 1:1141635‑M2/19‑70 (MQ=255) taGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctatgtgagtcacctctga > 1:197743‑M2/1‑20 (MQ=255) taGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt > 1:1072946‑M2/1‑20 (MQ=255) taGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt > 1:440125‑M2/1‑20 (MQ=255) taGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaac < 1:125491‑M2/64‑45 (MQ=255) tacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcata > 1:207761‑M2/17‑61 (MQ=255) tacgtgggtaggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTAcata > 1:1035954‑M2/17‑61 (MQ=255) aGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt < 1:282658‑M2/70‑52 (MQ=255) aGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagt < 1:285235‑M2/70‑52 (MQ=255) aGCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcgg < 1:356642‑M2/49‑31 (MQ=255) gCATCAGTGTTAATCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:261552‑M2/1‑18 (MQ=255) gCATCAGTGTTAATCACTtgatcttacccagcaatagt > 1:1228378‑M2/1‑18 (MQ=255) gCATCAGTGTTAATCACTtgatcttacccagcaatagt > 1:637402‑M2/1‑18 (MQ=255) aTCAGTGTTAATCACTtgatcttacccagcaatagtgg < 1:469051‑M2/38‑23 (MQ=255) gtgtTAATCACTtgatcttacccagcaatagtggacacgcggctaa < 1:113072‑M2/46‑35 (MQ=255) aggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATAttgttg > 1:1428832‑M2/8‑71 (MQ=255) aggatcaACTGGCCCAAGTGGTAACGATGCTCTGGAAGGTGTCAGCTACATACCATACAAAGat > 1:1783419‑M2/8‑64 (MQ=255) ggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCt < 1:1570903‑M2/40‑1 (MQ=255) ggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTgg > 1:361568‑M2/7‑71 (MQ=255) ggatcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTgg > 1:30209‑M2/7‑71 (MQ=255) ggatcaACTGCCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTgg > 1:962294‑M2/7‑71 (MQ=255) atcaACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGgtg > 1:1398542‑M2/5‑71 (MQ=255) aTCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcac > 1:331005‑M2/1‑6 (MQ=255) tCACTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcaca > 1:413795‑M2/1‑5 (MQ=255) aACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACaa < 1:1132062‑M2/53‑1 (MQ=255) aCTtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcac < 1:1473099‑M2/68‑66 (MQ=255) | ATCATTACGAAAAGCCGTTGCTGCTGCTATTGGTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTCTGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTA > W3110S.gb/576844‑576979 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |