| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 29 (1.270) | 23/102 | NT | 96.7% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 1 (0.040) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
CACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTAAA > W3110S.gb/3932864‑3933002 | cACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt < 1:1733124‑M2/71‑2 (MQ=255) ccTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga > 1:1586349‑M2/1‑68 (MQ=255) tgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATcc < 1:1544712‑M2/8‑1 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATccc < 1:1776709‑M2/9‑1 (MQ=255) aTGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc < 1:875325‑M2/71‑7 (MQ=255) aTGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc < 1:2059627‑M2/71‑7 (MQ=255) aCGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctac > 1:1897528‑M2/1‑62 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:1893666‑M2/1‑53 (MQ=255) tCCCGCTTTATAACCGTTTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatccta > 1:593214‑M2/1‑50 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaaa < 1:1936555‑M2/24‑1 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAg < 1:1493243‑M2/25‑1 (MQ=255) cccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga < 1:538851‑M2/52‑4 (MQ=255) gCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca < 1:1279434‑M2/71‑26 (MQ=255) ttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg > 1:323427‑M2/42‑70 (MQ=255) cTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca < 1:337668‑M2/70‑26 (MQ=255) tactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg > 1:1254956‑M2/41‑69 (MQ=255) tataACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacag > 1:610182‑M2/1‑42 (MQ=255) tcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGt > 1:1619998‑M2/38‑70 (MQ=255) ataACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacagg > 1:1011070‑M2/1‑41 (MQ=255) aCCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaata > 1:1064512‑M2/1‑38 (MQ=255) gTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagc < 1:176584‑M2/71‑37 (MQ=255) gccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:531575‑M2/40‑1 (MQ=255) gccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAg < 1:758646‑M2/41‑1 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgag < 1:463832‑M2/71‑40 (MQ=255) tGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgag < 1:938543‑M2/71‑40 (MQ=255) gTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcga > 1:1603892‑M2/1‑30 (MQ=255) gTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcc > 1:127207‑M2/1‑30 (MQ=255) gtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACgg > 1:1412411‑M2/26‑70 (MQ=255) tGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa > 1:618379‑M2/1‑28 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaa < 1:696462‑M2/49‑1 (MQ=255) tccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaa < 1:1304963‑M2/49‑1 (MQ=255) tttAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgt > 1:1376291‑M2/1‑24 (MQ=255) tttAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggc < 1:1184372‑M2/54‑31 (MQ=255) tttAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacac > 1:688193‑M2/1‑24 (MQ=255) tAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgtt > 1:1062938‑M2/1‑22 (MQ=255) attgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg > 1:1636128‑M2/17‑43 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCtat < 1:1303035‑M2/55‑1 (MQ=255) ggCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaatt > 1:1188914‑M2/1‑15 (MQ=255) gCACCACCGAAGTGtgatcctacccacgtaatatggacacaggc > 1:474310‑M2/1‑14 (MQ=255) taagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAt < 1:603698‑M2/64‑1 (MQ=255) ccaccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgtttt < 1:1189012‑M2/61‑51 (MQ=255) ccaccGAAGTGtgatcctacccacgtaatatggacacaggcctaagc > 1:485046‑M2/1‑11 (MQ=255) cactGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCt < 1:1315055/59‑1 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggacacaggcctaag < 1:1408803‑M2/45‑36 (MQ=255) accGAAGTGtgatcctacccacgtaatatggacacaggcctaagc > 1:1021760‑M2/1‑9 (MQ=255) aaagatgTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccg < 1:1638244‑M2/68‑63 (MQ=255) gatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCt < 1:646384‑M2/59‑1 (MQ=255) ccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaa < 1:814599‑M2/62‑55 (MQ=255) aagatGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccg < 1:507505‑M2/68‑63 (MQ=255) aaGTGtgatcctacccacgtaataaggacacaggcctaagcgaggttcttgttttcaaattgttc < 1:1544259‑M2/65‑61 (MQ=255) tgtgtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactg > 1:572908‑M2/2‑4 (MQ=255) gtgtgagcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggact < 1:269477‑M2/69‑67 (MQ=255) tgtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggacttag > 1:639474‑M2/1‑2 (MQ=255) tgtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgag > 1:299532‑M2/1‑2 (MQ=255) tgtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgag > 1:1006517‑M2/1‑2 (MQ=255) tGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCt < 1:1420283/64‑1 (MQ=255) | CACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTAAA > W3110S.gb/3932864‑3933002 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |