| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 3265071 = | 35 (1.540) | 3 (0.150) | 3/92 | NT | 9.3% | coding (813/990 nt) | tdcB | catabolic threonine dehydratase, PLP‑dependent |
| ? | W3110S.gb | 3265090 = | 27 (1.310) | coding (794/990 nt) | tdcB | catabolic threonine dehydratase, PLP‑dependent | |||||
GAGCGCCTGCGCCTTCGGTGACGACTTTATTGCGCTGAATTAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAA > W3110S.gb/3265025‑3265149 | tcgttcgtgaattagtcgatgacatcgtgctggtcagcgaagacgaAATCATACTGTTTCTGATTTc < 1:401634‑M1/21‑1 (MQ=255) agCGCCTGCGCCTTCGGTGACGACTTTATTGCGCTGAATTAAGGCAATCATACTGTTTCTGATTTCGTCtt > 1:96966/1‑71 (MQ=255) agCGCCTGCGCCTTCGGTGACGACTTTATTGCGCTGAATTAAGGCAATCATACTGTTTCTGATTTCGTCtt > 1:1799035/1‑71 (MQ=255) agCGCCTGCGCCTTCGGTGACGACTTTATTGCGCTGAATTAAGGCAATCATACTGTTTCTGATTTCGTCtt > 1:442753/1‑71 (MQ=255) cgcctgcgcctTCGGTGACGACTTTATTGCGCTGAATTAAGGCAATCATACTGTTTCTGATTTCGTCTTCg < 1:1505213/71‑1 (MQ=255) cctgcgcctTCGGTGACGACTTTATTGCGCTGAATTAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCt > 1:1400232/1‑71 (MQ=255) gcctTCGGTGACGACTTTATTGCGCTGAATTAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCa < 1:1615708/71‑1 (MQ=255) tCGGTGACGACTTTATTGCGCTGAATTAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCAc > 1:746201/1‑71 (MQ=255) cGGTGACGACTTTATTGCGCTGAATTAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCAc > 1:1849162/1‑70 (MQ=255) cGGTGACGACTTTATTGCGCTGAATTAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCAc < 1:436029/70‑1 (MQ=255) ggTGACGACTTTATTGCGCTGAATTAAGGCAATCATACTGTTTCTGATTTc > 1:1027569/1‑51 (MQ=255) ggTGACGACTTTATTGCGCTGAATTAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGa > 1:1427698/1‑71 (MQ=255) gTGACGACTTTATTGCGCTGAATTAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGAt > 1:966922/1‑71 (MQ=255) gacTTTATTGCGCTGAATTAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCAt > 1:589031/1‑71 (MQ=255) tttATTGCGCTTAATTAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATc < 1:875739/69‑1 (MQ=255) cgtgctggtcagcgaagacgaAATCATACTGTTTCTGATTTc < 1:1295339‑M1/21‑1 (MQ=255) ttATTGCGCTGAATTAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATc < 1:640471/68‑1 (MQ=255) ttGCGCTGAATTAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACt < 1:1505634/69‑1 (MQ=255) ttGCGCTGAATTAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTaa > 1:1964139/1‑71 (MQ=255) ttGCGCTGAATTAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTaa > 1:123636/1‑71 (MQ=255) cTGAATTAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCac < 1:267252/71‑1 (MQ=255) tGAATTAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCa < 1:584333/57‑1 (MQ=255) aaTTAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCacga > 1:1945910/1‑70 (MQ=255) aTTAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCacgaac > 1:972255/1‑71 (MQ=255) ttAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCacgaac > 1:50549/1‑70 (MQ=255) aaGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACt < 1:851404/57‑1 (MQ=255) aGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGAtt < 1:1013561/71‑1 (MQ=255) ggCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCAc > 1:557977/1‑42 (MQ=255) gaaatcagaaacagtatgattTCGTCTTCGCTGACCAGCACg < 1:1295339‑M2/21‑1 (MQ=255) gaaatcagaaacagtatgattTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCacgaacga < 1:401634‑M2/46‑1 (MQ=255) aatcagaaacagtatgattTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGAttt > 1:1998810‑M2/20‑68 (MQ=255) AATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGt > 1:1698313‑M1/1‑71 (MQ=255) TCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGAtt > 1:1510686‑M1/1‑65 (MQ=255) CATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCg < 1:1556730‑M1/67‑1 (MQ=255) cTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTa < 1:1441252/70‑1 (MQ=255) tGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTaaa > 1:23784/1‑71 (MQ=255) gTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGAtt < 1:1705550/58‑1 (MQ=255) gTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTaaa > 1:850530/1‑70 (MQ=255) tgattTCGTCTTCGCTGACCAGCACGATGTCATCGACTaa < 1:1837495‑M2/35‑1 (MQ=255) tgattTCGTCTTCGCTGACCAGCACGATGTCATCGACTaa < 1:1596260‑M2/35‑1 (MQ=255) tTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCacgaac > 1:1524987‑M2/2‑45 (MQ=255) tTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTa < 1:660427‑M2/58‑1 (MQ=255) tCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTaaa > 1:351931/1‑60 (MQ=255) | GAGCGCCTGCGCCTTCGGTGACGACTTTATTGCGCTGAATTAAGGCAATCATACTGTTTCTGATTTCGTCTTCGCTGACCAGCACGATGTCATCGACTAATTCACGAACGATTTCGTAAGTTAAA > W3110S.gb/3265025‑3265149 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |