Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 1,093,686 T→C 100% V130A (GTA→GCA)  ycdT → predicted diguanylate cyclase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb1,093,6860TC100.0% 57.9 / NA 18V130A (GTA→GCA) ycdTpredicted diguanylate cyclase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (6/12);  total (6/12)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

GTCCAAAATGACATTGCAATCTATTATTTGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGTATTGGTGAATAAAGTTAGTGAAAACACAAAACAGCGCAATTTATTTTCCAAAAAAA  >  W3110S.gb/1093619‑1093742
                                                                   |                                                        
gtCCAAAATGACATTGCAATCTATTATTTGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGCAt                                                        <  1:999435/70‑1 (MQ=255)
     aaaTGACATTGCAATCTATTATTTGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGCATTGGTg                                                   >  1:1776239/1‑70 (MQ=255)
            aTTGCAATCTATTATTTGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGCATTGGTGAATAAAGt                                           <  1:184695/71‑1 (MQ=255)
                 aaTCTATTATTTGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGCATTGGTGAATaaa                                             >  1:1110878/1‑64 (MQ=255)
                      attattTGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGCATTGGt                                                    >  1:1359104/1‑52 (MQ=255)
                       ttattTGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGCATTGGTGAATAAAGTTAGTGaaaa                                  <  1:1431377/69‑1 (MQ=255)
                         attTGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAacac                               >  1:2025369/1‑70 (MQ=255)
                          tttGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGCATTGGTGAATAAAGTTAGt                                       >  1:299457/1‑61 (MQ=255)
                              tttCGTCAGATGAGTTTGTGCATATTAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACAAAAc                          <  1:2012299/70‑1 (MQ=255)
                               ttCGTCAGATGAGTTTGTGCATATTAATATTTCTGGCATTGGTGAATAAAGTTAg                                        <  1:1098334/55‑1 (MQ=255)
                                     aGATGAGTTTGTGCATATTAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACAAAACAGCGCaa                   <  1:1745271/70‑1 (MQ=255)
                                         gAGTTTGTGCATATTAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACaaaa                           >  1:385930/1‑58 (MQ=255)
                                          aGTTTGTGCATATTAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACAAAACAGCGCAatttatt             <  1:1683594/71‑1 (MQ=255)
                                                 gCATATTAATATTTCTGGCATTGGTGAATAAAGTTAGTGaaa                                   <  1:352004/42‑1 (MQ=255)
                                                  cATATTAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACAAAACAGCGCAATTTATTTTCCaaa      <  1:1585884/70‑1 (MQ=255)
                                                  cATATTAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACAAAACAGCGCAATTTATTTTCCaaa      <  1:1462660/70‑1 (MQ=255)
                                                    tatTAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACAAAACAGCGCAATTTATTTTCCaaaaaa   <  1:1112386/71‑1 (MQ=255)
                                                      ttAATATTTCTGGCATTGGTGAATAAAGTTAGTGAAAACACAAAACAGCGCAATTTATTTTCCaaaaaaa  <  1:103764/70‑1 (MQ=255)
                                                                   |                                                        
GTCCAAAATGACATTGCAATCTATTATTTGTTTCGTCAGATGAGTTTGTGCATATTAATATTTCTGGTATTGGTGAATAAAGTTAGTGAAAACACAAAACAGCGCAATTTATTTTCCAAAAAAA  >  W3110S.gb/1093619‑1093742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: