Predicted mutation
evidence seq id position mutation freq annotation gene description
RA W3110S.gb 70,581 C→T 75.0% V65V (GTC→GTT araC → DNA‑binding transcriptional dual regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb70,5810CT75.0% 123.6 / 46.7 72V65V (GTC→GTTaraCDNA‑binding transcriptional dual regulator
Reads supporting (aligned to +/- strand):  ref base C (9/9);  new base T (25/29);  total (34/38)
Fisher's exact test for biased strand distribution p-value = 7.93e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01

TGAAAGGTTATATTCTCAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGG  >  W3110S.gb/70511‑70648
                                                                      |                                                                   
tGAAAGGTTATATTCTCAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTc                                                                     >  1:1107920/1‑71 (MQ=255)
tGAAAGGTTATATTCTCAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTc                                                                     <  1:419272/71‑1 (MQ=255)
   aaGGTTATATTCTCAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTTTGc                                                                  <  1:1947518/71‑1 (MQ=255)
       ttATATTCTCAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTTTGCCGAc                                                              <  1:1813823/71‑1 (MQ=255)
         atatTCTCAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTTTGCCGAcc                                                             <  1:1568828/70‑1 (MQ=255)
         atatTCTCAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTTTGCCGAcc                                                             <  1:1204989/70‑1 (MQ=255)
          tatTCTCAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACTAGAATTTGTTTGCCGACCg                                                            <  1:305750/70‑1 (MQ=255)
           atTCTCAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAAtttgtttg                                                                   >  1:1420579/1‑62 (MQ=255)
            ttCTCAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGt                                                         >  1:149296/1‑71 (MQ=255)
             tctcAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGt                                                         >  1:655071/1‑70 (MQ=255)
             tctcAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGt                                                         >  1:1176287/1‑70 (MQ=255)
              ctcAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTTTGCCGAc                                                              <  1:1996620/64‑1 (MQ=255)
              ctcAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTTTGCCGACAGGGTg                                                        >  1:288982/1‑70 (MQ=255)
                cAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGata                                                     >  1:1223232/1‑71 (MQ=255)
                  aTCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGATAtt                                                   <  1:190669/71‑1 (MQ=255)
                  aTCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGATAtt                                                   >  1:1823202/1‑71 (MQ=255)
                       aCCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGATAttt                                                  <  1:1285049/67‑1 (MQ=255)
                       aCCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTg                                                <  1:66135/69‑1 (MQ=255)
                       aCCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCt                                              >  1:543842/1‑71 (MQ=255)
                         cATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGa                                                               >  1:653484/1‑52 (MQ=255)
                           ttCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGTTc                                          <  1:232879/71‑1 (MQ=255)
                           ttCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCg                                                                <  1:630700/49‑1 (MQ=255)
                           ttCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTc                                          <  1:391713/71‑1 (MQ=255)
                           ttCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTc                                          >  1:538200/1‑71 (MQ=255)
                                ggTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGcc                                     <  1:1506181/71‑1 (MQ=255)
                                  tCAGGGTGTGGTGAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAg                                   <  1:701316/71‑1 (MQ=255)
                                  tCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTg                                                <  1:2030303/58‑1 (MQ=255)
                                  tCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGcc                                     <  1:859868/69‑1 (MQ=255)
                                    aGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTg                                             >  1:1049305/1‑59 (MQ=255)
                                      ggggTGGTGAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGga                                 >  1:1448551/1‑69 (MQ=255)
                                      ggggTGGTGAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGga                                 >  1:1327228/1‑69 (MQ=255)
                                      ggggTGGTGAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGga                                 >  1:1243567/1‑69 (MQ=255)
                                      ggggTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGgaga                               <  1:287066/71‑1 (MQ=255)
                                       gggTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGcc                                     <  1:227358/64‑1 (MQ=255)
                                         gtggtgAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGAt                            <  1:110915/71‑1 (MQ=255)
                                          tggtgAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGATAttt                                                  <  1:1320132/48‑1 (MQ=255)
                                          tggtgAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGAtt                           >  1:864899/1‑71 (MQ=255)
                                           ggtgAAAAATCAGGGACGAGAATTTGTTAGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGAtt                           >  1:263787/1‑70 (MQ=255)
                                            taaaaaaaTCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATtca                         <  1:229224/68‑1 (MQ=255)
                                            gtgAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCt                                              >  1:1188404/1‑50 (MQ=255)
                                            gtgAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCt                                              >  1:347547/1‑50 (MQ=255)
                                            gtgAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATtca                         <  1:1180659/71‑1 (MQ=255)
                                            gtgAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATtc                          <  1:60296/70‑1 (MQ=255)
                                             tgAAAAATCAGGGACGAGAATTTGTTTGCCGACCgg                                                           <  1:1114975/36‑1 (MQ=255)
                                             tgAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGc                                      <  1:1644537/57‑1 (MQ=255)
                                             tgAAAAATCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATtcat                        <  1:494677/71‑1 (MQ=255)
                                               aaaaaTCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAg                                   >  1:1903443/1‑58 (MQ=255)
                                                aaaaTCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGt                                            >  1:2073235/1‑48 (MQ=255)
                                                aaaaTCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCAc                     >  1:1834841/1‑71 (MQ=255)
                                                 aaaTCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGgag                                >  1:799524/1‑59 (MQ=255)
                                                  aaTCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTg                                                <  1:903201/42‑1 (MQ=255)
                                                  aaTCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTa                   <  1:1537776/71‑1 (MQ=255)
                                                   aTCAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCg                                       >  1:1619026/1‑50 (MQ=255)
                                                     cAGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATtca                         <  1:397387/62‑1 (MQ=255)
                                                      aGGGACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACgg                <  1:41293/70‑1 (MQ=255)
                                                      aGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGgaga                               >  1:819225/1‑55 (MQ=255)
                                                      aGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACgg                <  1:2010582/70‑1 (MQ=255)
                                                        ggACGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGgtcg             <  1:252038/71‑1 (MQ=255)
                                                         gaagagaATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGgtcgt            <  1:1076048/68‑1 (MQ=255)
                                                         gACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAg                                   <  1:1907677/48‑1 (MQ=255)
                                                          aCGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGgtcgt            >  1:762463/1‑70 (MQ=255)
                                                           cGAGAATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCa          <  1:1657735/71‑1 (MQ=255)
                                                              gaATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATtc                          >  1:1926464/1‑52 (MQ=255)
                                                              gaATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATcc       <  1:1625144/71‑1 (MQ=255)
                                                              gaATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATcc       >  1:1303638/1‑71 (MQ=255)
                                                              gaATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATcc       >  1:248624/1‑71 (MQ=255)
                                                              gaATTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATcc       >  1:1393514/1‑71 (MQ=255)
                                                               aaTTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCg      >  1:1239218/1‑71 (MQ=255)
                                                               aaTTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCg      >  1:1695584/1‑71 (MQ=255)
                                                               aaTTTGTCTGCCAACCGGGGGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCg      <  1:398262/71‑1 (MQ=255)
                                                                aTTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGgtc              >  1:245819/1‑62 (MQ=255)
                                                                aTTTGTTTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCg      >  1:802194/1‑70 (MQ=255)
                                                                aTTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCg      <  1:2065602/70‑1 (MQ=255)
                                                                 tttgtttgCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATtcat                        >  1:1326680/1‑51 (MQ=255)
                                                                 tttgtttgCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACg                 <  1:1565180/58‑1 (MQ=255)
                                                                 tttgtttgCCGACCGGGTGAAATTTTGCTGTTCCCGCCAGGAGAGATtcat                        >  1:900595/1‑51 (MQ=255)
                                                                 tttGTCTGCCGACCGGGTGATATTTTGCTGTTccc                                        >  1:281246/1‑35 (MQ=255)
                                                                   tGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAgg  >  1:1408670/1‑71 (MQ=255)
                                                                      |                                                                   
TGAAAGGTTATATTCTCAATCTCACCATTCGCGGTCAGGGGGTGGTGAAAAATCAGGGACGAGAATTTGTCTGCCGACCGGGTGATATTTTGCTGTTCCCGCCAGGAGAGATTCATCACTACGGTCGTCATCCGGAGG  >  W3110S.gb/70511‑70648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: