New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	167813 =	76 (0.930)	4 (0.060)	3/86	NT	5.5%	coding (330/2244 nt)	fhuA	ferrichrome outer membrane transporter
	?	W3110S.gb	167839 =	72 (1.010)					coding (356/2244 nt)	fhuA	ferrichrome outer membrane transporter

GCTTTGGCCTTCTGCCGCAAAGCCGCGAATGATCAGGTGGTCATAGGTGTTGGATGCGCCACGCGTACCAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/167885‑167813 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaacaCCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCT  >  W3110S.gb/167839‑167908                                                                                                                                                 GCTTTGGCCTTCTGCCGCAAAGCCGCGAATGATCAGGTGGTCATAGGTGTTGGATGCGCCACGCGTACCAA                                                                          >  1:444099/1‑71  CTTTGGCCTTCTGCCGCAAAGCCGCGAATGATCAGGTGGTCATAGGTGTTGGATGCGCCACGCGTACCA                                                                           <  1:2235768/69‑1    TTGGCCTTCTGCCGCAAAGCCGCGAATGATCAGGTGGTCATAGGTGTTGGATGCGCCACGCGTACCAA                                                                          >  1:1136523/1‑68    TTGGCCTTCTGCCGCAAAGCCGCGAATGATCAGGTGGTCATAGGTGTTGGATGCGCCACGCGTACCAA                                                                          >  1:2306664/1‑68     TGGCCTTCTGCCGCAAAGCCGCGAATGATCAGGTGGTCATAGGTGTTGGATGCGCCACGCGTACCAACA                                                                        <  1:7596924/69‑1     TGGCCTTCTGCCGCAAAGCCGCGAATGATCAGGTGGTCATAGGTGTTGGATGCGCCACGCGTACCAAC                                                                         <  1:1795834/68‑1     TGGCCTTCTGCCGCAAAGCCGCGAATGATCAGGTGGTCATAGGTGTTGGATGCGCCACGCGTACCAAC                                                                         <  1:3753362/68‑1      GGCCTTCTGCCGCAAAGCCGCGAATGATCAGGTGGTCATAGGTGTTGGATGCGCCACGCGTACCAAC                                                                         <  1:6361085/67‑1         CTTCTGCCGCAAAGCCGCGAATTATCAGGTGGTCATAGGTGTTGGATGCGCCACGCGTACCAAC                                                                         <  1:3073483/64‑1                CGCAAAGCCGCGAATGATCAGGTGGTCATAGGTGTTGGATGCGCCACGCGTACCA                                                                           <  1:6269418/55‑1                CGCAAAGCCGCGAATGATCAGGTGGTCATAGGTGTTGGATGCGCCACGCGTACCA                                                                           <  1:608174/55‑1                 GCAAAGCCGCGAATGATCAGGTGGTCATAGGTGTTGGATGCGCCACGCGTACCA                                                                           <  1:4751237/54‑1                                   AGGTGGTCATAGGTGTTGGATGCGCCACGCGTACCAAC                                                                         <  1:7127724/38‑1                                             AGGTGTTGGATGCGCCACGCGTACCAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGC                               >  1:424523/1‑70                                                   TGGATGCGCCACGCGTACCAACACCTATGACCACCTGATCATTCGCGG                                               >  1:3163867/1‑48                                                   TGGATGCGCCACGCGTACCAACACCTATGACCACCTGATCATTCGCGG                                               >  1:5454286/1‑48                                                    GGATGCGCCACGCGTACCAACACCTATGACCACCTGATCATTCGCGGCTTTGC                                         >  1:3340067/1‑53                                                                     CAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAAT       <  1:587088/70‑1                                                                     CAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAAC                >  1:4109735/1‑61                                                                     CAACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAA                                  >  1:7606459/1‑43                                                                      AACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGG     <  1:793465/71‑1                                                                      AACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGG     <  1:2069908/71‑1                                                                      AACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGG     >  1:6142170/1‑71                                                                      AACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGG     >  1:3002793/1‑71                                                                      AACACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGG     >  1:5940750/1‑71                                                                        CACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGG     >  1:655463/1‑69                                                                        CACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGG     >  1:4787272/1‑69                                                                        CACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAA                    >  1:2786166/1‑54                                                                        CACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAA                    >  1:1078737/1‑54                                                                         ACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCT  >  1:2436068/1‑71                                                                         ACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCT  >  1:5042576/1‑71                                                                         ACCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCC   >  1:6656647/1‑70                                                                                                                                                 GCTTTGGCCTTCTGCCGCAAAGCCGCGAATGATCAGGTGGTCATAGGTGTTGGATGCGCCACGCGTACCAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/167885‑167813 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaacaCCTATGACCACCTGATCATTCGCGGCTTTGCGGCAGAAGGCCAAAGCCAGAATAACTATCTGAATGGCCT  >  W3110S.gb/167839‑167908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.