| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 228057 = | NA (NA) | 12 (0.160) | 6/88 | NT | NA | noncoding (2299/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | W3110S.gb | 228076 = | NA (NA) | noncoding (2318/2904 nt) | rrlH | 23S ribosomal RNA | |||||
Only 100 of 156 total aligned reads displayed.
CACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/228131‑228057‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggaGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT > W3110S.gb/228076‑228145 CACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:1399764/71‑1 ACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA < 1:442961/71‑1 ACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA < 1:5749726/71‑1 ACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA < 1:7853412/71‑1 ACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGACGTTGCACTAACCTCCTGATGTCCGACCA < 1:3753960/71‑1 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:340564/1‑71 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:6323148/71‑1 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:4705350/71‑1 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:1370110/1‑71 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:6672260/1‑71 CCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:5366090/71‑1 CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG < 1:2623645/71‑1 CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:1224644/1‑70 CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:6096948/1‑70 CTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG > 1:3981087/1‑70 TGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA > 1:5399003/1‑71 TGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA > 1:5400695/1‑71 TGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA > 1:773736/1‑71 TGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA > 1:2474312/1‑71 CTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG < 1:7842715/68‑1 CTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:6449057/65‑1 CTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:1134205/65‑1 CTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC < 1:2560675/65‑1 GCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG < 1:4854253/65‑1 CGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA > 1:2329562/1‑62 CGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA > 1:1909280/1‑62 CGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA > 1:5316806/1‑62 CGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA > 1:1174153/1‑62 CCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA > 1:3628646/1‑60 CGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:4306298/60‑1 CGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:5656143/60‑1 CGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:2224062/60‑1 CGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA > 1:1955967/1‑59 ACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA > 1:1289183/1‑58 TCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC > 1:3469630/1‑44 TCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC > 1:2630112/1‑44 AAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG > 1:1761758/1‑45 AAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG > 1:7122443/1‑45 AAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA > 1:2926401/1‑43 AAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCA > 1:2832542/1‑43 AAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACC > 1:239669/1‑42 GCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA < 1:7295720/44‑1 GCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA < 1:6296497/44‑1 GCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG > 1:210340/1‑39 CTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG > 1:5174228/1‑38 TTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA < 1:3795047/38‑1 TTATGCCATTGCACTAACCTCCTGATGTCCGACCAGG < 1:2735666/37‑1 TTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:2431112/36‑1 TTATGCCATTGCACTAACCTCCTGATGTCCGACCAG < 1:2423593/36‑1 CCTCCTGATGTCCGACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGT < 1:4402275/60‑1 CCTCCTGATGTCCGACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGT < 1:7557561/60‑1 CCTCCTGATGTCCGACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTT < 1:3022473/48‑1 CTCCTGATGTCCGACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGA > 1:7465640/1‑55 CTCCTGATGTCCGACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGA > 1:6345713/1‑55 TCCTGATGTCCGACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGA > 1:2348429/1‑60 TCCTGATGTCCGACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGA > 1:6993918/1‑60 CCTGATGTCCGACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGC > 1:7511338/1‑63 GACCAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGC < 1:5851972/71‑1 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG > 1:4945151/1‑71 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG > 1:6231743/1‑71 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCA < 1:2849126/69‑1 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAG < 1:6707478/67‑1 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAG < 1:7369277/67‑1 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGC > 1:3544869/1‑56 CAGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGA > 1:4446017/1‑46 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGT > 1:1562789/1‑71 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGT > 1:3284457/1‑71 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG < 1:5524852/70‑1 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG > 1:6871899/1‑70 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAG > 1:6061780/1‑69 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGT < 1:3894166/43‑1 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGC > 1:1333770/1‑41 AGGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGC > 1:5243490/1‑41 AGGAGGTTACTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGG < 1:7714746/70‑1 GGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGT > 1:7058331/1‑70 GGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACG < 1:441844/46‑1 GGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGAC > 1:4171508/1‑45 GGAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGC > 1:7748464/1‑40 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:7197741/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA > 1:7261693/1‑71 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA > 1:7342149/1‑71 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:5099921/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:4306609/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA > 1:3214526/1‑71 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:3098947/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA < 1:1050508/71‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCA < 1:6515988/66‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCA < 1:7029075/66‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGC < 1:894446/53‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGC < 1:5717035/53‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGC < 1:4695550/53‑1 GAGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGC < 1:3568655/53‑1 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT < 1:6892439/71‑1 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT < 1:7653776/71‑1 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT < 1:553672/71‑1 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT < 1:4499291/71‑1 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT < 1:2865875/71‑1 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT < 1:1647368/71‑1 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCA > 1:6564186/1‑70 AGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGC < 1:5903110/58‑1 CACCTGCTCGCGCCGTCACGCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATGTCCGACCAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/228131‑228057‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggaGGTTAGTGCAATGGCATAAGCCAGCTTGACTGCGAGCGTGACGGCGCGAGCAGGTGCGAAAGCAGGTCAT > W3110S.gb/228076‑228145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |