| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1419105 = | 56 (0.690) | 5 (0.070) | 3/86 | NT | 8.7% | intergenic (‑5/+97) | recE/racC | exonuclease VIII, 5' ‑> 3' specific dsDNA exonuclease/hypothetical protein |
| ? | W3110S.gb | 1419129 = | 56 (0.780) | intergenic (‑29/+73) | recE/racC | exonuclease VIII, 5' ‑> 3' specific dsDNA exonuclease/hypothetical protein | |||||
CAGGCTATGAACAGTGTGTATCCGGCAAGATCATTCACTGAACAAAACGAATTTTAATCTGAGTTGAGGTTAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/1419179‑1419105‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaaaaTTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTT > W3110S.gb/1419129‑1419198 CAGGCTATGAACAGTGTGTATCCGGCAAGATCATTCACTGAACAAAACGAATTTTAATCTGAGTTGAGGT > 1:4003256/1‑70CAGGCTATGAACAGTGTGTATCCGGCAAGATCATTCACTGAACAAAACGAATTTTAATCTGAGTTGAGGT > 1:312114/1‑70 GCTATGAACAGTGTGTATCCGGCAAGATCATTCACTGAACAAAACGAATTTTAATCTGAGTTGAGGTTAA > 1:2313813/1‑70 CTATGAACAGTGTGTATCCGGCAAGATCATTCACTGAACAAAACGAATTTTAATCTGAGTTGAGGTTAAAA < 1:7690508/71‑1 CTATGAACAGTGAGTATCCGGCAAGATCATTCACTGAACAAAACGAATTTTAATCTGAGTTGAGGTTAAAA < 1:5640187/71‑1 CGGCAAGATCATTCACTGAACAAAACGAATTTTAATCTGAGTTGAGGTTAAA < 1:3842612/52‑1 CATTCACTGAACAAAACGAATTTTAATCTGAGTTGAGGTTAAAA > 1:6441897/1‑44 CACTGAACAAAACGAATTTTAATCTGAGTTGAGGTT > 1:5397851/1‑36 CACTGAACAAAACGAATTTTAATCTGAGTTGAGGTT > 1:3470683/1‑36 ACTGAACAAAACGAATTTTAATCTGAGTTGAGGTTAAA < 1:7703226/38‑1 ACTGAACAAAACGAATTTTAATCTGAGTTGAGGTTAAA < 1:5590028/38‑1 ACTGAACAAAACGAATTTTAATCTGAGTTGAGGTTAAA < 1:3942001/38‑1 TTTTAATCTGAGTTGAGGTTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAG < 1:2104090/71‑1 TTTAATCTGAGTTGATGTTAAAATTCGTTTTGTTCAGTGA < 1:3029649/40‑1 TTTAATCTGAGTTGAGGTTAAAATTCGTTTTGTTCAGTGA < 1:4458882/40‑1 TTTAATCTGAGTTGAGGTTAAAATTCGTTTTGTTCAGTGA < 1:6155337/40‑1 TTAATCTGAGTTGAGGTTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCC > 1:2634548/1‑71 TTAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATA < 1:1603116/52‑1 TAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTT > 1:2747869/1‑47 TAAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTT > 1:6686710/1‑47 AAAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGC < 1:6631574/56‑1 AAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCC > 1:3630947/1‑52 AAATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCC > 1:6814785/1‑52 AATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATT > 1:1882347/1‑71 ATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTT < 1:2831413/71‑1 ATTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGG < 1:579651/65‑1 CAGGCTATGAACAGTGTGTATCCGGCAAGATCATTCACTGAACAAAACGAATTTTAATCTGAGTTGAGGTTAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/1419179‑1419105‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaaaaTTCGTTTTGTTCAGTGAATGATCTTGCCGGATACACACTGTTCATAGCCTGCGCCATACGCAGGCTATTT > W3110S.gb/1419129‑1419198 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |