| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1486246 | 38 (0.470) | 8 (0.110) | 5/88 | NT | 16.8% | coding (1415/3846 nt) | hrpA | ATP‑dependent helicase |
| ? | W3110S.gb | = 1486267 | 45 (0.620) | coding (1436/3846 nt) | hrpA | ATP‑dependent helicase | |||||
TCTGCTCGAAGAGCTGGGCGCGATCACCACTGATGAACAGGCCAGCGCCTATAAACTGACGCCGCTCGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/1486175‑1486246‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgACAGGCAACTGCGAGAGCTGGCGACCGAGCGGCGTCAGTTTATAGGCGCTGGCCTGTTCATCAGTGGTGA < W3110S.gb/1486267‑1486198 TCTGCTCGAAGAGCTGGGCGCGATCACCACTGATGAACAGGCCAGCGCCTATAAACTGACGCCGCTCGGT < 1:6268167/70‑1TCTGCTCGAAGAGCTGGGCGCGATCACCACTGATGAACAGGCCAGCGCCTATAAACTGACGACGCTCGGT > 1:229833/1‑70 GAAGAGCTGGGCGCGATCACCACTGATGAACAGGCCAGCGCCTATAAACTGACGCCGCTCG < 1:1540442/61‑1 AGAGCTGGGCGCGATCACCACTGATGAACAGGCCAGCGCCTATAAACTGACGCCGCTCGGTCGACAGGCAA > 1:2567970/1‑71 AGAGCTGGGCGCGATCACCACTGATGAACAGGCCAGCGCCTATAAACTGACGCCGCTCGGTCGACAGGCAA > 1:7624594/1‑71 AGAGCTGGGCGCGATCACCACTGATGAACAGGCCAGCGCCTATAAACTGACGCCGCTCGGTCGACAGGCAA > 1:5104456/1‑71 AGAGCTGGGCGCGATCACCACTGATGAACAGGCCAGCGCCTATAAACTGACGCCGCTCGGTCGACAGGCAA > 1:5692620/1‑71 CACCACTGATGAACAGGCCAGCGCCTATAAACTGACGCCGCTCG > 1:6826631/1‑44 ACCACTGATGAACAGGCCAGCGCCTATAAACTGACGCCGCTCGGTCGACAGGCAACTGCGAGAGCTGGCG < 1:6271551/70‑1 ACTGATGAACAGGCCAGCGCCTATAAACTGACGCCGCTCGGT > 1:554977/1‑42 ACTGATGAACAGGCCAGCGCCTATAAACTGACGCCGCTCGGT > 1:643397/1‑42 CTGATGAACAGGCCAGCGCCTATAAACTGACGCCGCTCGG < 1:6887394/40‑1 CTATAAACTGACGCCGCTCGGTCGACAGGCAACTGCGAGAG > 1:4030867/1‑41 ATAAACTGACGCCGCTCGGTCGACAGGCAACTGCGAGAG > 1:1904876/1‑39 ATAAACTGACGCCGCTCGGTCGACAGGCAACTGCGAG < 1:884378/37‑1 TCGACAGGCAACTGCGAGAGCTGGCGACCGAGCGGCGTCAGTTTATAGGCGCTGGCCTGTTCATCAGTGG > 1:4876260/1‑70 GACAGGCAACTGCGAGAGCTGGCGACCGAGCGGCGTCAGTTTATAGGCGCTGGCCTGTTCATCAGTGGTGA > 1:984169/1‑71 TCTGCTCGAAGAGCTGGGCGCGATCACCACTGATGAACAGGCCAGCGCCTATAAACTGACGCCGCTCGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/1486175‑1486246‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgACAGGCAACTGCGAGAGCTGGCGACCGAGCGGCGTCAGTTTATAGGCGCTGGCCTGTTCATCAGTGGTGA < W3110S.gb/1486267‑1486198 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |