| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1497534 | 68 (0.840) | 5 (0.070) | 3/88 | NT | 7.1% | coding (533/1344 nt) | ydcJ | conserved hypothetical protein |
| ? | W3110S.gb | = 1497540 | 69 (0.940) | coding (539/1344 nt) | ydcJ | conserved hypothetical protein | |||||
TATCTTCACCCCACGTTGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/1497460‑1497534‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacaAACTCCTGTGCCTGTGTTTCGTTAAAACCGCCCTGCTGCTCATATTCCTCTAACAGTTGTCGACAACGTG < W3110S.gb/1497540‑1497471 TATCTTCACCCCACGTTGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGG > 1:7049797/1‑71 ATCTTCACCGCACGTTGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGG > 1:4727820/1‑70 ATCTTCACCCCACGTTGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGG > 1:4873649/1‑70 ATCTTCACCCCACGTTGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGG > 1:2456278/1‑70 CTTCACCCCACGTTGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCA > 1:2524528/1‑70 TTCACCCCACGTTGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCA > 1:5917080/1‑69 CACCCCACGTTGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCAC < 1:3309341/68‑1 TCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCAC < 1:4904962/56‑1 TCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCA > 1:7861552/1‑55 ACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAAACTCCTGTGCCTGT > 1:2326467/1‑69 TTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCA < 1:225028/45‑1 TTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCA < 1:6729731/45‑1 GAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAAACTCCTGTGC < 1:1091261/52‑1 AATATTAGCAGCAGGGCGGTTTTAACGAAACACAGG < 1:2574593/36‑1 AATATGAGCAGCAGGGCGGTTTTAACGAAACACAGG > 1:5373825/1‑36 AATATGAGCAGCAGGGCGGTTTTAACGAAACACAGG < 1:5140455/36‑1 ATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAAACTCCTGTGCCT > 1:4183302/1‑52 ATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAAACTCCTGTGCCT > 1:2449962/1‑52 ATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACAAACTCCTGTGCCT > 1:1658103/1‑52 CACAAACTCTTGTGCCTGTGTTTCGTTAAAACCGCCCTGCTGCTCA < 1:5239068/46‑1 CACAAACTCCTGTGCCTGTGTTTCGTTAAAACCGCCCTGCTGCTCATATTCCTCTAACAGTTGTCGACAA < 1:5263410/70‑1 CACAAACTCCTGTGCCTGTGTTTCGTTAAAACCGCCCTGCTGCTCA < 1:6707961/46‑1 CACAAACTCCTGTGCCTGTGTTTCGTTAAAACCGCCCTGCTGCTCA < 1:1714889/46‑1 ACAAACTCCTGTGCCTGTGTTTCGTTAAAACCGCCCTGCTGCTCATATTCCTCTAACAGTTGTCGACAACG < 1:2611789/71‑1 ACAAACTCCTGTGCCTGTGTTTCGTTAAAACCGCCCTGCTGCTCATATTCCTCTAACAGTTGTCGACAACG < 1:2016348/71‑1 ACAAACTCCTGTGCCTGTGTTTCGTTAAAACCGCCCTGCTGCTC > 1:7852595/1‑44 CAAACTCCTGTGCCTGTGTTTCGTTAAAACCGCCCTGCTGCTCATATTCCTCTAACAGTTGTCGACAACGT > 1:6154996/1‑71 AAACTCCTGTGCCTGTGTTTCGTTAAAACCGCCCTGCTGCTCATATTCCTCTAACAGTTGTCGACAACGag > 1:1406818/1‑69 AAACTCCTGTGCCTGTGTTTCGTTAAAACCGCCCTGCTGCTCATATTCCTCTAACAGTTGTCGACAACGTG < 1:3818701/71‑1 AAACTCCTGTGCCTGTGTTTCGTTAAAACCGCCCTGCTGCTCATATTCCTCTAACAGTTGTCGACAACGTG < 1:3026829/71‑1 AAACTCCTGTGCCTGTGTTTCGTTAAAACCGCCCTGCTGCTCATATTCCTCTAACAGTTGTCGACAACGTG < 1:5970663/71‑1 AAACTCCTGTGCCTGTGTTTCGTTAAAACCGCCCTGCTG > 1:360821/1‑39 TATCTTCACCCCACGTTGTCGACAACTGTTAGAGGAATATGAGCAGCAGGGCGGTTTTAACGAAACACAGGCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/1497460‑1497534‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcacaAACTCCTGTGCCTGTGTTTCGTTAAAACCGCCCTGCTGCTCATATTCCTCTAACAGTTGTCGACAACGTG < W3110S.gb/1497540‑1497471 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |