| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | W3110S.gb | 2,176,983 | Δ1,199 bp | 100% | [gatA]–[gatA] | [gatA], insH, [gatA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | W3110S.gb | 2176983–2178180 | 2178181 | 2–1199 | 156 [0] | [0] 158 | [gatA]–[gatA] | [gatA],insH,[gatA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2176982 | 0 (0.000) | 110 (1.500) | 44/88 | NT | 100% | coding (71/321 nt) | gatA | galactitol‑specific enzyme IIA component of PTS |
| ? | W3110S.gb | 2178182 = | 0 (0.000) | coding (202/315 nt) | gatA | galactitol‑specific enzyme IIA component of PTS | |||||
Only 100 of 162 total aligned reads displayed.
CGTCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2176908‑2176982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTG > W3110S.gb/2178182‑2178250 CGTCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGAC > 1:5734559/1‑71 GTCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACT < 1:1117675/71‑1 GTCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACT < 1:5156007/71‑1 GTCGTAATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACT < 1:3614032/71‑1 ATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCA > 1:391766/1‑70 TCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCAT < 1:7337380/70‑1 TCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCAT < 1:4654524/70‑1 ATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAA < 1:1943542/71‑1 ATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCG < 1:6625040/71‑1 TCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCG < 1:2157830/70‑1 CGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCT < 1:6576084/71‑1 CGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCT < 1:3313271/71‑1 CGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCT < 1:1421842/71‑1 TGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCAC > 1:403090/1‑70 CTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAAT > 1:13595/1‑71 CTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAA < 1:3339871/70‑1 GAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGC > 1:5410735/1‑71 GAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAAAGC > 1:5446061/1‑71 AAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCG > 1:5893020/1‑71 AAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCG > 1:252050/1‑71 AAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATG < 1:858912/69‑1 AAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCAT > 1:5001407/1‑53 AATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGG > 1:2848509/1‑70 ATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTA > 1:2052345/1‑71 ATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGCTA < 1:3414923/71‑1 TGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTA < 1:4898125/70‑1 GAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATT > 1:2460521/1‑71 GAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATT > 1:3954937/1‑71 AACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATG < 1:5928830/63‑1 AACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGA < 1:5389708/49‑1 ACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC < 1:7748883/71‑1 CTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC < 1:2204072/70‑1 TTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCAT > 1:177426/1‑43 TATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAA < 1:6956012/69‑1 TATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAA < 1:3679343/69‑1 TATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTAT > 1:2611980/1‑64 TATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGC > 1:7488123/1‑59 ATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCAT < 1:5278869/41‑1 ATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCAT < 1:3166059/41‑1 TTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCAT < 1:7318446/40‑1 TTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTA > 1:2311910/1‑60 TGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGA > 1:5526570/1‑40 TGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGA > 1:6030691/1‑40 TTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTG > 1:7820050/1‑60 TGGCCTTAACAGATAAATGGCTGCCGACTTAGCATGAATCGCCTCACAATGCGG > 1:2263558/1‑54 CTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGC > 1:6834967/1‑48 TAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCA > 1:2753002/1‑70 TAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTC > 1:5485277/1‑69 TAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATA < 1:7026588/58‑1 TAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTG‑AATAGCATGC > 1:3591968/1‑63 AACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAG > 1:7267822/1‑71 AACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAG > 1:2031306/1‑71 AACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAG > 1:6439099/1‑71 AACAGATAAATGGCTGACGACTTAGCATGAATCGCCT > 1:3795437/1‑37 ACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGC > 1:776949/1‑52 ACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGG > 1:3504850/1‑46 aATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTA < 1:2641688/44‑1 GATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATT < 1:4476768/71‑1 ATAAATGGCTGACGACTTAGCATGAATCGCCTCAAAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTA > 1:6893087/1‑71 TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTAT < 1:516053/71‑1 TAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTAT < 1:4131765/71‑1 AATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCC < 1:3195869/71‑1 ATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAAT < 1:4051789/47‑1 TGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCG < 1:3304935/71‑1 GGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGG > 1:1254708/1‑71 GGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAA > 1:4555661/1‑44 GGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAA > 1:5695615/1‑44 GGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAA > 1:3526367/1‑44 GCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGT < 1:5235045/71‑1 GCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGT < 1:7108582/71‑1 GCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGT < 1:6771465/71‑1 GCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGG > 1:6773869/1‑70 GCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAA > 1:2441162/1‑43 CTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATACCGTGCTGCTCAAGCATTATCCCGGTA < 1:6149086/71‑1 TGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCAT < 1:3463718/60‑1 TGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCAT < 1:1933844/60‑1 TGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAG < 1:7905514/44‑1 TGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAG < 1:926686/44‑1 TGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAG < 1:1379614/44‑1 TGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAG < 1:2139515/44‑1 GACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAAT > 1:7328422/1‑41 GACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAAT > 1:3411823/1‑41 GACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAAT > 1:7515678/1‑41 ACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGG < 1:5623060/71‑1 ACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGG > 1:6554437/1‑70 ACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCG > 1:3996213/1‑44 GACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCC < 1:6427079/62‑1 TTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGT < 1:2925293/40‑1 TTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGT < 1:3922387/40‑1 AGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTG > 1:1955313/1‑71 AGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTG > 1:4300252/1‑71 AGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTG > 1:3563295/1‑71 AGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCT < 1:4935681/70‑1 AGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCC < 1:3690672/56‑1 AGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAG > 1:4074018/1‑48 GCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTG < 1:536923/70‑1 GCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTG < 1:6157666/70‑1 GCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTA < 1:2366144/60‑1 GCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTA < 1:1534462/60‑1 GCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTA < 1:6479364/60‑1 CGTCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2176908‑2176982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttagCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTG > W3110S.gb/2178182‑2178250 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |