New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 2728810NA (NA)13 (0.170) 3/92 NT NA noncoding (1004/1542 nt) rrsG 16S ribosomal RNA
?W3110S.gb = 2728831 NA (NA)noncoding (983/1542 nt) rrsG 16S ribosomal RNA

AACACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2728738‑2728810
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGGTGCT  <  W3110S.gb/2728831‑2728762
                                                                                                                                               
AACACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAAC                                                                          >  1:3752120/1‑71
AACACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAAC                                                                          >  1:7568220/1‑71
AACACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAAC                                                                          >  1:1624457/1‑71
AACACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAAC                                                                          >  1:1721708/1‑71
AACACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAAC                                                                          <  1:611663/71‑1
AACACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAAC                                                                          <  1:2711369/71‑1
AACACGACCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAAC                                                                          >  1:409758/1‑71
 ACACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACT                                                                         <  1:2777308/71‑1
 ACACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACT                                                                         >  1:6814808/1‑71
 ACACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACT                                                                         <  1:624930/71‑1
 ACACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACT                                                                         >  1:5294418/1‑71
 ACACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACT                                                                         >  1:4699208/1‑71
 ACACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACT                                                                         >  1:4690149/1‑71
 ACACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACT                                                                         <  1:2379872/71‑1
 ACACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAAC                                                                          >  1:7926659/1‑70
 ACACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAAC                                                                          <  1:5111760/70‑1
  CACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACTT                                                                        >  1:2363442/1‑71
  CACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACTT                                                                        >  1:4578692/1‑71
  CACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACTT                                                                        >  1:4268302/1‑71
  CACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACTT                                                                        <  1:2688965/71‑1
  CACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACTT                                                                        >  1:5782185/1‑71
  CACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACTT                                                                        >  1:3814416/1‑71
  CACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACTT                                                                        >  1:7262592/1‑71
  CACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACT                                                                         >  1:4661393/1‑70
  CACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTATGAAAACTT                                                                        >  1:3078709/1‑71
       GCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACTT                                                                        >  1:934135/1‑66
         TGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACT                                                                         <  1:7602108/63‑1
          GACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAAC                                                                          >  1:2260079/1‑61
           ACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAAC                                                                          >  1:471457/1‑60
           ACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAAC                                                                          >  1:4627141/1‑60
           ACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATACTCATCTCTGAAAAC                                                                          >  1:557390/1‑60
             GACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAAC                                                                          >  1:775065/1‑58
                AGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAAC                                                                          >  1:5623056/1‑55
                AGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAAC                                                                          >  1:405604/1‑55
                     TGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACT                                                                         <  1:5649610/51‑1
                     TGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACT                                                                         <  1:5456580/51‑1
                     TGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACT                                                                         <  1:4987580/51‑1
                     TGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACT                                                                         <  1:2115318/51‑1
                      GCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACT                                                                         <  1:5765199/50‑1
                         GCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACT                                                                         <  1:2982723/47‑1
                           ACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACTTAC                                                                      >  1:664784/1‑48
                            CCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAAC                                                                          >  1:927573/1‑43
                            CCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAAC                                                                          >  1:2711571/1‑43
                            CCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAAC                                                                          >  1:6041090/1‑43
                             attTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACTTACCTGGTCTTGACATCCACGGAAGTTT                                             <  1:5321525/68‑1
                             attTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACTTACCTGGTCTTGACATCCACGGAAGTTT                                             <  1:5312537/68‑1
                             CTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACTTACCTGGTCTTGACATCCACGGAAGTTT                                             <  1:6483889/71‑1
                             CTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACTTACCTGGTCTTGACATCCACGGAAGTTT                                             <  1:1994981/71‑1
                              TGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAAC                                                                          >  1:4163130/1‑41
                               GTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAAC                                                                          >  1:4704171/1‑40
                               GTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAAC                                                                          >  1:7760973/1‑40
                                  TCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACTTACCTGGTCTTGACATCCACGGAAGTTT                                             <  1:5864992/66‑1
                                  TCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACT                                                                         <  1:7157810/38‑1
                                          CCCGAAGGCACATTCTCATCTCTGAAAACTTACCTGGTCTTGACATCCACGTAAGTTTT                                            >  1:1947290/1‑59
                                          CCCGAAGGCACATTCTCATCTCTGAAAACTTACCTGGTCTTGACATCCACGTAAGTTTT                                            >  1:1956521/1‑59
                                          CCCGAAGGCACATTCTCATCTCTGAAAACTTACCTGGTCTTGACATCCACGGAAGTTTT                                            >  1:3825628/1‑59
                                             GAAGGCACATTCTCATCTCTGAAAACTTACCTGGTCTTGACATCCACGG                                                   <  1:6746457/49‑1
                                             GAAGGCACATTCTCATCTCTGAAAACTTACCTGGTCTTGACATCCACGG                                                   <  1:7723355/49‑1
                                             GAAGGCACATTCTCATCTCTGAAAACTTACCTGGTCTTGACATCCACGG                                                   <  1:2422855/49‑1
                                             GAAGGCACATTCTCATCTCTGAAAACTTACCTGGTCTTGACATCCACGG                                                   <  1:2413365/49‑1
                                             GAAGGCACATTCTCATCTCTGAAAACTTACCTGGTCTTGACATCCACGG                                                   <  1:4187018/49‑1
                                                                      CTTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTTGGGAACCGTGAGACAGGTG    <  1:4561066/71‑1
                                                                      CTTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGGTG    <  1:1359712/71‑1
                                                                      CTTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGGTG    <  1:3839107/71‑1
                                                                      CTTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGG      <  1:155553/69‑1
                                                                      CTTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGG      <  1:2843123/69‑1
                                                                       TTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGGTGC   >  1:539786/1‑71
                                                                       TTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGGTGC   >  1:2385108/1‑71
                                                                       TTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGGTGC   >  1:6593261/1‑71
                                                                       TTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGGTGC   >  1:1620293/1‑71
                                                                       TTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGGTGC   >  1:762026/1‑71
                                                                       TTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGGTGC   >  1:5979076/1‑71
                                                                       TTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGGTGC   >  1:5087331/1‑71
                                                                       TTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGGTGC   >  1:3441844/1‑71
                                                                       TTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGGTGC   >  1:1058725/1‑71
                                                                       TTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGGTG    >  1:750276/1‑70
                                                                       TTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGG      <  1:2861068/68‑1
                                                                       TTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAAC                 <  1:723782/57‑1
                                                                       TTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAG                                  <  1:6593142/40‑1
                                                                       TTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGA                                      >  1:3039655/1‑36
                                                                       TTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGA                                      <  1:7428789/36‑1
                                                                       TTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGA                                      <  1:5294875/36‑1
                                                                       TTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGA                                      <  1:1815641/36‑1
                                                                       TTACCTGGTCTTGACATCCACGGAAGTTTTCAGAGA                                      <  1:553361/36‑1
                                                                       TTACCTGGTCTTGACATCCACGGAAGTTTTCAGAG                                       >  1:3376865/1‑35
                                                                        TACCTGGTCTTGACATCCAGGGAAGTTTTCAGAGATGAGAATGTGCCTTC                       >  1:1345963/1‑50
                                                                        TACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGGTGCT  >  1:7266240/1‑71
                                                                        TACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGGTGCT  >  1:5202878/1‑71
                                                                        TACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGGTGCT  >  1:4325066/1‑71
                                                                        TACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGGTGCT  >  1:282315/1‑71
                                                                        TACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAAC                 >  1:4121211/1‑56
                                                                        TACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTC                       >  1:6378320/1‑50
                                                                        TACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCATCGGGA                   >  1:2690181/1‑54
                                                                        TACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTACCTTCGGGAACCGTGAGACAGGTGCT  >  1:1411215/1‑71
                                                                        TACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATG                              <  1:6448371/43‑1
                                                                                                                                               
AACACGAGCTGACGACAGCCATGCAGCACCTGTCTCACGGTTCCCGAAGGCACATTCTCATCTCTGAAAACTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2728738‑2728810
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttACCTGGTCTTGACATCCACGGAAGTTTTCAGAGATGAGAATGTGCCTTCGGGAACCGTGAGACAGGTGCT  <  W3110S.gb/2728831‑2728762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.