| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 3192959 | 83 (1.020) | 8 (0.110) | 4/86 | NT | 9.7% | coding (1440/1662 nt) | yqiK | conserved hypothetical protein |
| ? | W3110S.gb | = 3192968 | 76 (1.060) | coding (1449/1662 nt) | yqiK | conserved hypothetical protein | |||||
GTTGCAGGCGCTGCCTGCGGTAATAGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3192884‑3192959‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attcagACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCATCGGCTCAACGGATTTCTCTATTACCGCA < W3110S.gb/3192968‑3192899 GTTGCAGGCGCTG‑CTGCGGTAATAGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTAT > 1:587387/1‑71 TTGCAGGCGCTGCCTGCGGTAATAGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTA < 1:2377875/70‑1 CGGTAATAGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTC > 1:6719668/1‑57 AATAGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTA > 1:5737184/1‑50 AGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAG > 1:1947592/1‑52 AGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAG > 1:2683606/1‑52 AGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAG > 1:2674832/1‑52 GAGAAATCCGGTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGACCATCGACCTGAATAATC < 1:609218/70‑1 ATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAG > 1:7820415/1‑46 TCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGACCATCGACCTGAA < 1:6773312/59‑1 TCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAGACCATCGACCTGAA < 1:2059900/59‑1 GAGCCGTTGAAGTCAATCGACGGTATCAAGATTATTCAG > 1:1030050/1‑39 GAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAG > 1:7718757/1‑39 GAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAG > 1:5925058/1‑39 GAGCCGATGAAGTCAATCGACGGTATCAAGATTATT < 1:7696005/36‑1 ATGAAGTCAATCGACGGTATCAAGATTATTCAGACCATCGAC < 1:337081/42‑1 ATGAAGTCAATCGACGGTATCAAGATTATTCAGACCATCGAC < 1:1347959/42‑1 ATGAAGTCAATCGACGGTATCAAGATTATTCAGACCATCGAC < 1:5518251/42‑1 CAATCGACGGTATCAAGATTATTCAGACCATCGACCT > 1:228179/1‑37 CAATCGACGGTATCAAGATTATTCAGACCATCGACCT > 1:4526182/1‑37 ATTCAGACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCATCGGCTCAACGGATTTCTCTATT > 1:4532015/1‑70 ATTCAGACCATCGACCTGAATAATCTTGATACCGTC < 1:7889474/36‑1 ATTCAGACCATCGACCTGAATAATCTTGATACCGTC < 1:4970543/36‑1 TCAGACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCATCGGCTCAACGGATTTCTCTATTACC > 1:4364685/1‑71 TCAGACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCATCG < 1:6815111/48‑1 TCAGACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCATCG < 1:5654021/48‑1 TCAGACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCATCG < 1:5588059/48‑1 TCAGACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCATCG < 1:4014705/48‑1 TCAGACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCATCG < 1:5353655/48‑1 TCAGACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCATCG < 1:5080314/48‑1 CAGACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCATCGGCTCAACGGATTTCTCTATTACCG > 1:354482/1‑71 CAGACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCATCGGCTCAACGGATTTCTCTATTACC < 1:5135770/70‑1 CAGACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCATCGGCTCAACGGATTTCTCTATTACC < 1:4011514/70‑1 CAGACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCAT > 1:3476188/1‑45 CAGACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCAT > 1:6290979/1‑45 CAGACCATCGACCTGAATAATCTTGATACCGTCGATTGACT > 1:6027698/1‑41 CAGACCATCGACCTGAATAATCTTGATACCGTCGATTG < 1:4407188/38‑1 AGACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCATCGGCTCAACGGATTTCTCTATTACCG < 1:2633847/70‑1 AGACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCATCGGCTCAACGGATTTC > 1:6339371/1‑60 AGACCATCGACCTGAATAATCTTGATACCGTCGATTGAC > 1:3202177/1‑39 AGACCATCGACCTGAATAATCTTGATACCGTCGATTG > 1:5387056/1‑37 GACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCATCGGCTCAACGGATTTCTCTATTACCGCA < 1:7075378/71‑1 GACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCATCGGCTCAACGGATTTCTCTATTACCGCA < 1:5070724/71‑1 GACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCATCGGCTCAACGGATTTCTCTATTACCGCA < 1:3308603/71‑1 GACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCATCGGCTCAACGGATTT < 1:5295164/58‑1 GACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCATCGGCTCAACG < 1:2011191/53‑1 GACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCATCGGCTCAACG < 1:1651995/53‑1 GACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTC > 1:1303558/1‑41 GTTGCAGGCGCTGCCTGCGGTAATAGAGAAATCCGTTGAGCCGATGAAGTCAATCGACGGTATCAAGATTATTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/3192884‑3192959‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attcagACCATCGACCTGAATAATCTTGATACCGTCGATTGACTTCATCGGCTCAACGGATTTCTCTATTACCGCA < W3110S.gb/3192968‑3192899 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |