New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 3481934	64 (0.790)	6 (0.080)	3/88	NT	9.1%	coding (101/1152 nt)	argE	acetylornithine deacetylase
	?	W3110S.gb	= 3481943	63 (0.860)					coding (110/1152 nt)	argE	acetylornithine deacetylase

GAGATTTACCGCGCTCTGATTGCCACACCTTCAATAAGCGCCACGGAAGAGGCACTCGATCAAAGCAATGCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3481861‑3481934 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagaGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAG  <  W3110S.gb/3481943‑3481876                                                                                                                                                GAGATTTACCGCGCTCTGATTGCCACACCTTCAATAAGCGCCACGGAATAGGCACTCGATCAAAGCAATG                                                                          >  1:3245335/1‑70  AGATTTACCGCGCTCTGATTGCCACACCTTCAATAAGCGCCACGGAAGAGGCACTCGATCAAAGCAATG                                                                          >  1:2260141/1‑69    ATTTACCGCGCTCTGATTGCCACACCTTCAATAAGCGCCACGGAAGAGGCACTCGATCAAAGCAATG                                                                          >  1:522693/1‑67                                   TAAGCGCCACGGAAGAGGCACTCGATCAAAGCAATGC                                                                         >  1:2037/1‑37                                           ACGGAAGAGGCACTCGATCAAAGCAATGCAGAGTGATTAAATCTGCAT                                                      >  1:1086981/1‑48                                           ACGGAAGAGGCACTCGATCAAAGCAATGCAGAGTGATTAAATCTGCAT                                                      >  1:5798814/1‑48                                           ACGGAAGAGGCACTCGATCAAAGCAATGCAGAGTGATTAAATCTGCAT                                                      >  1:6221203/1‑48                                           ACGGAAGAGGCACTCGATCAAAGCAATGCAGAGTGATTAAATCTGCAT                                                      >  1:7108746/1‑48                                                 GAGGCACTCGATCAAAGCAATGCAGAGTGATTAAATCTG                                                         <  1:4067422/39‑1                                                        TCGATCAAAGCAATGCAGAGTGATTAAATCTGCATTGCTTTGATCGA                                          <  1:858751/47‑1                                                                      GCAGAGTGATTATATCTGCATTGCTTTGATCGAGT                                        <  1:3207525/35‑1                                                                      GCAGAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGT                             <  1:4643748/46‑1                                                                        AGAGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAG  <  1:5891148/71‑1                                                                          AGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAA      <  1:1445199/65‑1                                                                                                                                                GAGATTTACCGCGCTCTGATTGCCACACCTTCAATAAGCGCCACGGAAGAGGCACTCGATCAAAGCAATGCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/3481861‑3481934 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagaGTGATTAAATCTGCATTGCTTTGATCGAGTGCCTCTTCCGTGGCGCTTATTGAAGGTGTGGCAATCAG  <  W3110S.gb/3481943‑3481876

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.