New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	3992199 =	95 (1.170)	8 (0.110)	4/84	NT	9.6%	intergenic (‑310/+567)	arsR/gor	DNA‑binding transcriptional regulator/glutathione oxidoreductase
	?	W3110S.gb	3992227 =	69 (0.990)					intergenic (‑338/+539)	arsR/gor	DNA‑binding transcriptional regulator/glutathione oxidoreductase

TACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCG‑‑ATATATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/3992273‑3992199 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatatacTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGGATGTAAAAAAACCGACTTTGCGTCGGTT  >  W3110S.gb/3992227‑3992296                                                                                                                                                     TACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCG‑‑ATA                                                                             <  1:2508774/70‑1   CATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCG‑‑ATATA                                                                           >  1:3090519/1‑70     TCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCG‑‑ATATATAC                                                                        <  1:4812584/71‑1     TCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCG‑‑ATATATAC                                                                        <  1:545416/71‑1        GGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCG‑‑ATATATACa                                                                       >  1:804264/1‑68        GGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCG‑‑ATATATAC                                                                        <  1:1456424/68‑1              GGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCG‑‑ATA                                                                             <  1:2778607/57‑1                ACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCG‑‑ATA                                                                             <  1:5147082/55‑1                 CAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCG‑‑ATATA                                                                           >  1:1787318/1‑56                           TATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCG‑‑ATA                                                                             >  1:2164262/1‑44                           TATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCG‑‑ATA                                                                             >  1:7900582/1‑44                                              AAGTATATAAATCGTCACTGCG‑‑ATATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCC                                      <  1:888897/64‑1                                                 TATATAAATCGTCACTGCG‑‑ATATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGGAT                            >  1:5256923/1‑71                                                 TATATAAATCGTCACTGCG‑‑ATATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGGAT                            >  1:250463/1‑71                                                     TAAATCGTCACTGCGATATATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCG                               >  1:7468050/1‑66                                                     TAAATCGTCACTGCGATATATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCG                               >  1:2522280/1‑66                                                     TAAATCGTCACTGCGATATATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCG                               >  1:3986341/1‑66                                                     TAAATCGTAACTGCGATATATATACTTTCACTGGGTCATCGTCATATTAAGCCT                                           >  1:7423699/1‑54                                                       AATCGTCACTGCG‑‑ATATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGGATGTAAA                       <  1:924361/70‑1                                                                       TATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGGATGTAAAAAAACCGACTTTGC         <  1:2280280/70‑1                                                                        ATATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGGATGTAAAAAAACCGACTTT           >  1:3762091/1‑67                                                                         TATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGGATGTAAAAAAACCGACTTTGCGT       <  1:1167690/70‑1                                                                         TATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGG                              <  1:7219787/47‑1                                                                          ATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGGATGTAAAAAAACCGACTTTGCGTC      <  1:4269534/70‑1                                                                          ATACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGGATGTAAAAAAACC                 <  1:6176035/59‑1                                                                           TACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGGATGTAAAAAAACCGACTTTGCGTCGG    <  1:3769681/71‑1                                                                           TACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGGATGTAAAAAAACCGACTTTGCGTCGG    >  1:7799558/1‑71                                                                            ACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGGATGTA                         >  1:1191867/1‑49                                                                            ACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGG                              <  1:289480/44‑1                                                                            ACTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGG                              <  1:1126499/44‑1                                                                             CTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGGATGTAAAAAAACCGACTTTGCGTCGGTT  <  1:3880299/71‑1                                                                             CTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGGATGTAAAAAAACCGACTTTGCGTCGGTT  <  1:6021730/71‑1                                                                             CTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGGATGTAAAAAAACCGACTTTGCGTCGGT   <  1:6579432/70‑1                                                                                                                                                     TACATCCGGATTCGGACAAGGCTTAATATGACGATGACCCAGTGAAAGTATATAAATCGTCACTGCG‑‑ATATATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/3992273‑3992199 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tatatacTTTCACTGGGTCATCGTCATATTAAGCCTTGTCCGAATCCGGATGTAAAAAAACCGACTTTGCGTCGGTT  >  W3110S.gb/3992227‑3992296

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.