| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4121956 = | 134 (1.650) | 4 (0.050) | 4/92 | NT | 3.4% | coding (25/1089 nt) | aroB | 3‑dehydroquinate synthase |
| ? | W3110S.gb | 4121973 = | 104 (1.360) | coding (42/1089 nt) | aroB | 3‑dehydroquinate synthase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATTTCAGCGGTAAGAATGAAGCTGGTTCATTAAACAAACCAGATGCGATGGTAATTGGGTAACTACGTTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/4122028‑4121956‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccAATTACCATCGCATCTGGTTTGTTTAATGAACCAGCTTCATTCTTACCGCTGAAATCGGGCGAGCAGG > W3110S.gb/4121973‑4122040 ATTTCAGCGGTAAGAATGAAGCTGGTTCATTAAACAAACCAGATGCGATGGTAATTGGGTAACTACGTTCC < 1:5934987/71‑1 ttcCAGCGGTAAGAATGAAGCTGGTTCATTAAACAAACCAGATGCGATGGTAATTGGGTAACTACGTTCCC > 1:1200355/4‑71 TTCAGCGGTAAGAATGAAGCTGGTTCATTAAACAAACCAGATGCGATGGTAATTGGGTAACTACGTTCCCC > 1:4231682/1‑71 TCAGCGGTAAGAATGAAGCTGGTTCATTAAACAAACCAGATGCGATGGTAATTGGGTAACTACGTTCCCC < 1:6811964/70‑1 TCAGCGGTAAGAATGAAGCTGGTTCATTAAACAAACCAGATGCGATGGTAATTGGGTAACTACGTTCCCC > 1:4158842/1‑70 TCAGCGGTAAGAATGAAGCTGGTTCATTAAACAAACCAGATGCGATGGTAATTGGGTAACTACGTTCCCC < 1:4871556/70‑1 AGCGGTAAGAATGAAGCTGGTTCATTAAACAAACCAGATGCGATGGTAATTGGGTAACTACGTTCCCC > 1:4800441/1‑68 TGGTTCATTAAACAAACCAGATGCGATGGTAATTGGGTAACTACGTTCCC < 1:3543415/50‑1 AACAAACCAGATGCGATGGTAATTGGGTAACTACGTTCCCC < 1:1618910/41‑1 AACAAACCAGATGCGATGGTAATTGGGTAACTACGTTCCCC < 1:2944479/41‑1 AACAAACCAGATGCGATGGTAATTGGGTAACTACGTTCCCC < 1:3825322/41‑1 AACAAACCAGATGCGATGGTAATTGGGTAACTACGTTCCCC < 1:4973407/41‑1 ACAAACCAGATGCGATGGTAATTGGGTAACTACGTTCCCC > 1:4712047/1‑40 CAAACCAGATGCGATGGTAATTGGGTAACTACGTTCC > 1:5451996/1‑37 ACCAGATGCGATGGTAATTGGGTAACTACGTTCCCC > 1:7498171/1‑36 ACCAGATGCGATGGTAATTGGGTAACTACGTTCCC > 1:198746/1‑35 AATTGGGTAACTACGTTCCCCAATTACCATCGCATCTGGTTTGTTTAATGAACCAGCTTCATTCT < 1:1316450/65‑1 ATTGGGTAACTACGTTCCCCAATTACCATCGCATCTGGTTTGT > 1:2928078/1‑43 TTGGGTAACTACGTTCCCCAATTACCATCGCATCTGGTTTGTTTAA < 1:786986/46‑1 GGGTAACTACGTT‑CCCAATTACCATCGCATCTGGTTTGTTTAATGAACCA > 1:7750920/1‑50 CCAATTACCATCGCATCTGGTTTGTTTAATGAACCAGCTTCATTCTTACCGCTGAAATCGGGCGAGCAGG < 1:4663421/70‑1 ATTTCAGCGGTAAGAATGAAGCTGGTTCATTAAACAAACCAGATGCGATGGTAATTGGGTAACTACGTTCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/4122028‑4121956‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccAATTACCATCGCATCTGGTTTGTTTAATGAACCAGCTTCATTCTTACCGCTGAAATCGGGCGAGCAGG > W3110S.gb/4121973‑4122040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |