| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 4425133 = | 123 (1.510) | 5 (0.070) | 4/90 | NT | 4.6% | coding (472/1398 nt) | ulaA | L‑ascorbate‑specific enzyme IIC component of PTS |
| ? | W3110S.gb | 4425159 = | 96 (1.280) | coding (498/1398 nt) | ulaA | L‑ascorbate‑specific enzyme IIC component of PTS | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGAGTCGGCTTGTACATCATGTTGGAAGTGATGCCCCAGTAGAGCGAAACCAGAATCGCGGTACAGATAATGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/4425206‑4425133‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtTTCGCTCTACTGGGGCATCACTTCCAACATGATGTACAAGCCGACTCAGGAAGTGACGGATGGCTGTGGT > W3110S.gb/4425159‑4425228 TGAGTCGGCTTGTACATCATGTTGGAAGTGATGCCCCAGTAGAGCGAAACCAGAATCGCGGTACAGATAAT > 1:1621440/1‑71TGAGTCGGCTTGTACATCATGTTGGAAGTGATGCCCCAGTAGAGCGAAACCAGAATCGCGGTACAGATAAT > 1:1630640/1‑71TGAGTCGGCTTGTACATCATGTTGGAAGTGATGCCCCAGTAGAGCGAAACCAGAATCGCGGTACAGATAAT > 1:1923486/1‑71 GAGTCGGCTTGTACATCATGTTGGAAGTGATGCCCCAGTAGAGCGAAACCAGAATCGCGGTACAGATAATG > 1:6670024/1‑71 AGTCGGCTTGTACATCATGTTGGAAGTGATGCCCCAGTAGAGCGAAACCAGAATCGCGGTACAGATAATG < 1:7485224/70‑1 GCTTGTACATCATGTTGGAAGTGATGCCCCAGTAGAGCGAAACCAGAATCGCGGTACAGATAATG > 1:3481854/1‑65 GTACATCATGTTGGAAGTGATGCCCCAGTAGAGCGAAACCAGAATCGCGGTACAGATAATG > 1:3022354/1‑61 GTACATCATGTTGGAAGTGATGCCCCAGTAGAGCGAAACCAGAATCGCGGTACAGATAATG > 1:7299033/1‑61 TGTTGGAAGTGATGCCCCAGTAGAGCGAAACCAGAATCGCGGTACAGATAATGGT > 1:4488821/1‑55 TGTTGGAAGTGATGCCCCAGTAGAGCGAAACCAGAATCGCGGTACAGATAATGGT > 1:4798821/1‑55 GTGATGCCCCAGTAGAGCGAAACCAGAATCG‑GGTACAGATAATGG > 1:5953916/1‑45 AACCAGAATCGCGGTACAGATAATGGTTTCGCTCTACTGGGGCAT < 1:1861073/45‑1 AACCAGAATCGCGGTACAGATAATGGTTTCGCTCTACTGGGGCAT < 1:1851816/45‑1 ACCAGAATCGCGGTACAGATAATGGTTTCGCTCTACTGGGGCATCACTTCCAACATGATGTACAAGCCGAC > 1:2791461/1‑71 CCAGAATCGCGGTACAGATAATGGTTTCGCTCTACTGGGGCATCA > 1:6993836/1‑45 GAATCGCGGTACAGATAATGGTTTCGCTCTACTGGGGCATCACTTCCAACATGATGTACAAGCCGACTCAG < 1:3412663/71‑1 TGGTTTCGCTCTACTGGGGCATCACTTCCAACATGATGTACAAGCCGA > 1:5736895/1‑48 GGTTTCGCTCTACTGGGGCATCACTTCCAACATGATGTACAAGCCGACTCAGGAAGTGACGGATGGCTGTG > 1:6190145/1‑71 GGTTTCGCTCTACTGGGGCATCACTTCCAACATGATGTACAAGCCGACTCAGGAAGTGACGGATGGCTGTG > 1:6568640/1‑71 TTTCGCTCTACTGGGGCATCACTTCCAACATGATGTACAAGCCGACTCAGGAAGTGACGGATGGCTGTGGT < 1:1409790/71‑1 TTTCGCTCTACTGGGGCATCACTTCCAACATGATGTACAAGCCGACTCAGGAAGTGACGGATGGCTGTGGT < 1:6623616/71‑1 TTTCGCTCTACTGGGGCATCACTTCCAACATGATGTACAAGCCGACTCAGGAAGTGACGGATGGCTGTGGT < 1:5021512/71‑1 TTTCGCTCTACTGGGGCATCACTTCCAACATGATGTACAAGCCGACTCAGGAAGTGACGGATGGCTGTGGT < 1:4185691/71‑1 TTTCGCTCTACTGGGGCATCACTTCCAACATGATGTACAAGCCGACTCAGGAAGTGACGGATGGCTGTGGT > 1:4163043/1‑71 TTTCGCTCTACTGGGGCATCACTTCCAACATGATGTACAAGCCGACTCAGGAAGTGACG < 1:543300/59‑1 TTTCGCTCTACTGGGGCATCACTTCCAACATGATGTACAAGCCGACTCAGGAA < 1:4901255/53‑1 TGAGTCGGCTTGTACATCATGTTGGAAGTGATGCCCCAGTAGAGCGAAACCAGAATCGCGGTACAGATAATGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/4425206‑4425133‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtTTCGCTCTACTGGGGCATCACTTCCAACATGATGTACAAGCCGACTCAGGAAGTGACGGATGGCTGTGGT > W3110S.gb/4425159‑4425228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |