| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 713954 | 90 (1.110) | 383 (4.700) | 97/98 | NT | 82.1% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | W3110S.gb | 2809398 = | 77 (0.950) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
Only 100 of 597 total aligned reads displayed.
TGATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGTGAT > W3110S.gb/713884‑714024 | tGATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaa > 1:6311871/1‑71 (MQ=255) aTCGAACACATCATGCAGTCGATGCAATTCCCGGTGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcg > 1:7538624‑M1/1‑69 (MQ=255) cGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggc > 1:1003920‑M1/1‑67 (MQ=255) gAACACATCATGCAGTCGATGCAATTCCCGGCGGATTTGATTGAGAAGGTTTGCGGAACTATCTAAcggct > 1:6555267‑M1/1‑66 (MQ=255) gAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggct > 1:7595506‑M1/1‑66 (MQ=255) acaTCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaa < 1:871639‑M1/71‑10 (MQ=255) tcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaatta < 1:1075560‑M1/71‑13 (MQ=255) tcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaatt > 1:4954831‑M1/1‑59 (MQ=255) tcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAga > 1:2275495/1‑70 (MQ=255) tcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAga > 1:4534395/1‑70 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaaaa > 1:7504604/1‑59 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatg < 1:3304147‑M1/71‑16 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACg < 1:162431/60‑1 (MQ=255) tCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatg < 1:391503‑M1/66‑16 (MQ=255) tCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctga < 1:7777762‑M1/58‑8 (MQ=255) cGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggaca > 1:2871129/1‑70 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcat < 1:639928‑M1/71‑23 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaa > 1:7845002‑M1/1‑49 (MQ=255) tGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatac > 1:2654368‑M1/1‑47 (MQ=255) gCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacc > 1:6593055‑M1/1‑46 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccca < 1:4414099‑M1/71‑28 (MQ=255) aTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaa < 1:6889847‑M1/71‑29 (MQ=255) tCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaat > 1:238401‑M1/1‑41 (MQ=255) tCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaat > 1:3958989‑M1/1‑41 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg > 1:3240929‑M1/1‑40 (MQ=255) ccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg < 1:5398328‑M1/70‑32 (MQ=255) ccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg < 1:4130684‑M1/70‑32 (MQ=255) ggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga > 1:4822969‑M1/1‑37 (MQ=255) gcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga > 1:6214957‑M1/1‑36 (MQ=255) cggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCca < 1:5260365/71‑1 (MQ=255) gAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagtt < 1:1475385‑M1/71‑39 (MQ=255) gAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagtt < 1:5449989‑M1/71‑39 (MQ=255) gAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaa < 1:5204562‑M1/46‑14 (MQ=255) aaTTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcat < 1:1834374‑M1/54‑23 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcg > 1:847217‑M1/1‑31 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcg > 1:6112658‑M1/1‑31 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcg > 1:1247876‑M1/1‑31 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatg < 1:7334917‑M1/45‑16 (MQ=255) tgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcat > 1:3076398‑M1/1‑29 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt < 1:3188166‑M1/70‑43 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt < 1:5326538‑M1/70‑43 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt < 1:928127‑M1/70‑43 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttc > 1:2756381‑M1/1‑28 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttc > 1:1383688‑M1/1‑28 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaat < 1:3627035‑M1/38‑11 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgttta > 1:4334124‑M1/1‑27 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgttt < 1:6988240‑M1/70‑44 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt < 1:7222248‑M1/69‑43 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggac < 1:2980349/46‑1 (MQ=255) attgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGt < 1:246411/70‑1 (MQ=255) ttgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgt > 1:1893047‑M1/1‑26 (MQ=255) ttgaGAAGGTTTGCGGAACTATCCAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTg < 1:6431368/70‑1 (MQ=255) tgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacg > 1:6658189‑M1/1‑25 (MQ=255) tgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatag > 1:1763736‑M1/1‑25 (MQ=255) tgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTg > 1:2315900/1‑69 (MQ=255) gaAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggat < 1:3776551‑M1/56‑35 (MQ=255) gaAGGTTTGCGGAACTATCTAAcggctgaaattaatga < 1:2558328‑M1/38‑17 (MQ=255) aaGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgccca < 1:5543910‑M1/71‑51 (MQ=255) aaGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg < 1:2352824‑M1/52‑32 (MQ=255) aaGGTTTGCGGAACTATCTAAAACGTTTCAgacaaag < 1:5776667/37‑1 (MQ=255) aGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtc > 1:2132433‑M1/1‑20 (MQ=255) gTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattg < 1:6833274‑M1/71‑54 (MQ=255) gTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattg < 1:5608203‑M1/71‑54 (MQ=255) gTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattg < 1:3674243‑M1/71‑54 (MQ=255) gTTTGCGGAACTATCTAAcggctgaaattaatgagggcataccca < 1:2508610‑M1/45‑28 (MQ=255) tttGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgccca > 1:5064973‑M1/1‑17 (MQ=255) tttGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacg < 1:7814934‑M1/63‑47 (MQ=255) tttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCaa < 1:6502804/49‑1 (MQ=255) tttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCa < 1:5494453/63‑1 (MQ=255) ttGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt > 1:82504‑M1/1‑16 (MQ=255) ttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGc > 1:4501241/1‑61 (MQ=255) ttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCt > 1:4238158/1‑71 (MQ=255) tGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCt < 1:1526363/70‑1 (MQ=255) tGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTg > 1:1204579/1‑71 (MQ=255) ctgaaCTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaa < 1:5136971‑M1/69‑59 (MQ=255) cGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaaca < 1:709997‑M1/70‑58 (MQ=255) cGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaaca < 1:5968551‑M1/70‑58 (MQ=255) cGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttc > 1:294039‑M1/1‑13 (MQ=255) ggAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGca > 1:1686290/1‑70 (MQ=255) ggAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGca > 1:1135274/1‑70 (MQ=255) gAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGcac > 1:3142121/1‑70 (MQ=255) gAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGcac > 1:2682633/1‑70 (MQ=255) aaCTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaac < 1:769392‑M1/66‑57 (MQ=255) aCTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgc > 1:48761‑M1/1‑9 (MQ=255) tATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt < 1:2803217‑M1/49‑43 (MQ=255) aTCTAAcggctgaaattaatgaggtcatacccaaa > 1:2830024‑M1/1‑6 (MQ=255) tCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattga < 1:3441248‑M1/59‑55 (MQ=255) tCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgttta > 1:4673873‑M1/1‑5 (MQ=255) tCTAAcggctgaaattaatgaggtcataccaaaatggatagttcgttta > 1:115693‑M1/1‑5 (MQ=255) tCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaaca > 1:4465667/1‑68 (MQ=255) cTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgccc < 1:4043404‑M1/53‑50 (MQ=255) aacggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaatt > 1:130589‑M1/1‑2 (MQ=255) aacggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaatt > 1:3545267‑M1/1‑2 (MQ=255) aacggctgaaattaatgaggtcatacccaaatggatagttcgtttacgccca < 1:7140889‑M1/52‑51 (MQ=255) aacggctgaaattaatgaggtcatacccaaatggatagttcgtttacgccca < 1:460303‑M1/52‑51 (MQ=255) aacggctgaaattaatgaggtcatacccaaatggatagctcctttacgcccatt > 1:4089218‑M1/1‑2 (MQ=255) acggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctcaaattt < 1:592‑M1/71‑71 (MQ=255) acggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaattt > 1:2011240‑M1/1‑1 (MQ=255) acggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaatt < 1:2171551‑M1/70‑70 (MQ=255) aaaCGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGtga < 1:5714795/70‑1 (MQ=255) | TGATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGTGAT > W3110S.gb/713884‑714024 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |