| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 926400 | NA (NA) | 7 (0.090) | 3/98 | NT | 10.1% | intergenic (‑7/+247) | serW/infA | tRNA‑Ser/translation initiation factor IF‑1 |
| ? | W3110S.gb | = 1097921 | 62 (0.760) | intergenic (‑28/‑206) | serX/ycdW | tRNA‑Ser/2‑ketoacid reductase | |||||
Only 100 of 114 total aligned reads displayed.
CCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAG > W3110S.gb/926332‑926469 | ccGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGttt > 1:4896192/1‑71 (MQ=32)ccGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGttt > 1:6162936/1‑71 (MQ=32) cGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTAc < 1:3390355/71‑1 (MQ=255) gCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCaa < 1:3258597/70‑1 (MQ=255) gCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCaa < 1:7667036/70‑1 (MQ=255) cGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGtt < 1:3226565/58‑1 (MQ=31) cGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAAcc > 1:4038582/1‑71 (MQ=255) tataCACACTTTCCAGGCGTTCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCt > 1:5642062/1‑70 (MQ=255) tataCACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTc < 1:1888240/71‑1 (MQ=255) taCACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCa < 1:6419611/70‑1 (MQ=255) taCACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCAt > 1:2023001/1‑71 (MQ=255) taCACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCAt < 1:5374287/71‑1 (MQ=255) cacacTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTa > 1:7476260/1‑58 (MQ=255) cacacTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATgg < 1:7180413/71‑1 (MQ=255) cacacTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATgg > 1:4019882/1‑71 (MQ=255) cacacTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATgg > 1:1737419/1‑71 (MQ=255) acacTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGtttt > 1:6476856/1‑53 (MQ=35) acacTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGc < 1:1587077/55‑1 (MQ=40) acacTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATggg < 1:1759447/71‑1 (MQ=255) acacTTTCCAGGCGTGCTACTTCAGCCACTCGGACACCTCACCAAATTGtttt > 1:1067360/1‑53 (MQ=255) cacTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGt < 1:4245666/71‑1 (MQ=255) acTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCaaa > 1:5269567/1‑60 (MQ=255) acTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCaaa > 1:7232839/1‑60 (MQ=255) acTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAAcc < 1:1135146/62‑1 (MQ=255) acTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTg > 1:3979474/1‑71 (MQ=255) acTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTg > 1:2752454/1‑71 (MQ=255) cTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGc < 1:2452662/52‑1 (MQ=40) cTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGc < 1:3188411/52‑1 (MQ=40) ttCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTgg > 1:5678202/1‑69 (MQ=255) tCCAGGCGTGCTCCTTCAGCCACTCTGACACCTCACCAAATTGTTTTGCTACCAAACCTCATgg < 1:845596/64‑1 (MQ=255) tCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATgg < 1:7041251/64‑1 (MQ=255) ccAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCaa < 1:4573629/70‑1 (MQ=255) ccAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCaa < 1:5731392/70‑1 (MQ=255) cAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCa < 1:1371117/52‑1 (MQ=255) cAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACg < 1:800681/71‑1 (MQ=255) aGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCt < 1:858005/56‑1 (MQ=255) aGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCa > 1:5064672/1‑58 (MQ=255) aGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACgg < 1:2910656/71‑1 (MQ=255) aGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACgg < 1:477579/71‑1 (MQ=255) aGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACgg < 1:1064247/71‑1 (MQ=255) ggCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTTTGCTACCAAACCTCAt > 1:3808325/1‑58 (MQ=255) ggCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACggg > 1:6077648/1‑71 (MQ=255) ggCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACggg < 1:4804648/71‑1 (MQ=255) gCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTg < 1:1141903/43‑1 (MQ=40) gCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACgggg > 1:5778196/1‑71 (MQ=255) gCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACggg > 1:1319290/1‑70 (MQ=255) gTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTg > 1:4177205/1‑41 (MQ=40) gTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTg > 1:3151675/1‑41 (MQ=40) gTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTg > 1:7581547/1‑41 (MQ=40) gTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTg > 1:4483950/1‑41 (MQ=40) tGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTc < 1:4847135/52‑1 (MQ=255) tGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGc < 1:1295042/61‑1 (MQ=255) tGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGgcgc < 1:4265941/71‑1 (MQ=255) gCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGgcgc > 1:4393979/1‑70 (MQ=255) gCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGgcgc > 1:7575250/1‑70 (MQ=255) cTCCTTCAGCCACTCGGACACCTCACCAAATTGtt < 1:878075/35‑1 (MQ=33) cTCCTTCAGCCACTCGGACACCTCACCAAATTGtt < 1:2184181/35‑1 (MQ=33) tCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCt > 1:5965576/1‑39 (MQ=255) cTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTa > 1:4317858/1‑38 (MQ=255) cTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAAcc < 1:3680027/45‑1 (MQ=255) cTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGctacta > 1:6349884/1‑71 (MQ=255) cTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGctacta > 1:7498016/1‑71 (MQ=255) ttCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCa > 1:4574847/1‑47 (MQ=255) ttCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCa > 1:2482069/1‑47 (MQ=255) tCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGgc > 1:953139/1‑62 (MQ=255) cAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCa > 1:105270/1‑45 (MQ=255) cAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACtat < 1:2425395/69‑1 (MQ=255) ccACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACtata < 1:1164737/67‑1 (MQ=255) aCTCGGACACCTCACCAAATTGTTTTGCTACCAAACCt < 1:1104740/38‑1 (MQ=255) aCTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTc > 1:7936344/1‑39 (MQ=255) aCTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGt > 1:3372837/1‑71 (MQ=255) cTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCa < 1:7635189/39‑1 (MQ=255) cTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCa < 1:4327406/39‑1 (MQ=255) cTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGtt < 1:5546920/71‑1 (MQ=255) tCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACgg < 1:82090/51‑1 (MQ=255) cGGACACCTCACCAAATTGTTTTGCTACCAAACCTCAt < 1:1126869/38‑1 (MQ=255) ggACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTg < 1:1344736/69‑1 (MQ=255) ggACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTg < 1:2272571/69‑1 (MQ=255) ggACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTg < 1:665231/69‑1 (MQ=255) acacCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACtata < 1:1518949/59‑1 (MQ=255) cacCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTa < 1:3597611/71‑1 (MQ=255) cTCACCAAATTGTTTTGCTACCAAACCTCCTGGGTGGCAACGGGGCGCTACTATAGGGAGTTg < 1:3557440/63‑1 (MQ=255) cACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGctact > 1:572227/1‑50 (MQ=255) cACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACg > 1:5764286/1‑71 (MQ=255) aCCAAATTGTTTTGCTACCAAACCTCATGGGTGGCaa > 1:3137847/1‑37 (MQ=255) aCCAAATTGTTTTGCTACCAAACCTCATGGGTGGCaa > 1:5317090/1‑37 (MQ=255) aCCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACgg > 1:7092/1‑71 (MQ=255) aCCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACgg < 1:174124/71‑1 (MQ=255) cAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACgg < 1:3712790/38‑1 (MQ=255) cAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACgg < 1:3326806/38‑1 (MQ=255) cAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGctacta > 1:6174940/1‑48 (MQ=255) cAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGctacta > 1:6167027/1‑48 (MQ=255) aaaTTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGgc < 1:7328347/40‑1 (MQ=255) aaTTGTTTTGCTACCAAACCTCATGGGTGGCAACgg < 1:5686303/36‑1 (MQ=255) aTTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTa < 1:3048659/60‑1 (MQ=255) aTTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCaag < 1:6789891/71‑1 (MQ=255) ttGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGct > 1:1044475/1‑40 (MQ=255) gTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCaag > 1:6968463/1‑68 (MQ=255) ttttGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCaagaag > 1:532893/1‑70 (MQ=255) ttttGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCaaga > 1:4949916/1‑68 (MQ=255) | CCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAG > W3110S.gb/926332‑926469 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |