| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 971038 = | 51 (0.630) | 7 (0.100) | 4/82 | NT | 15.6% | coding (1228/1233 nt) | ycaQ | conserved hypothetical protein |
| ? | W3110S.gb | 971066 = | 33 (0.480) | intergenic (+23/‑29) | ycaQ/ycaR | conserved hypothetical protein/conserved hypothetical protein | |||||
GTGACATTAGGATGCTGCCCGCAAGGCCTCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCAT > W3110S.gb/970969‑971103 | gTGACATTAGGATGCTGCCCGCAAGGCCTCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGc < 1:6297004/71‑1 (MQ=255) aaccgggcaggaaatgatttcaagcagacgatgatccatagttcctccagatggatcgggttatgaatGCa < 1:1184245‑M1/3‑1 (MQ=255) accgggcaggcaatgatttcaagcagacgatgatccatagttcctccagatggatcgggttatgaatg < 1:4656011‑M1/1‑1 (MQ=255) accgggcaggcaatgatttcaagcagacgatgatccatagttcctccagatggatcgggttatgaatGCa < 1:5544828‑M1/3‑1 (MQ=255) accgggcaggcaatgatttcaagcagacgatgatccatagttcctccagatggatcgggttatgaatGCa < 1:5779109‑M1/3‑1 (MQ=255) aCATTAGGATGCTGCCCGCAAGGCCTCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCAt < 1:1303177/70‑1 (MQ=255) cgggcaggcaatgatttcaagcagacgatgatccatagttcctccagatggatcgggttatgaatGCATaa > 1:6923075‑M1/66‑71 (MQ=255) cATTAGGATGCTGCCCGCAAGGCCTCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATaa < 1:2198694/71‑1 (MQ=255) tAGGATGCTGCCCGCAAGGCCTCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAAt < 1:2498537/70‑1 (MQ=255) ggATGCTGCCCGCAAGGCCTCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGa < 1:6869486/70‑1 (MQ=255) gATGCTGCCCGCAAGGCCTCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATaa < 1:3634798/65‑1 (MQ=255) gcaatgatttcaagcagacgatgatccatagttcctccagatggatcgggttaagaatGc > 1:1019599‑M1/59‑60 (MQ=255) caatgatttcaagcagacgatgatccatagttcctccagatggatcgggttatgaatGCATaa > 1:3635162‑M1/58‑63 (MQ=255) gctgcCCGCAAGGCCTCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTAt > 1:1400488/1‑70 (MQ=255) ctgcCCGCAAGGCCTCTTTACTGATTGCCGCACCGGCTGGTAAATAGACCCCGTCGCATAAAt < 1:4027628/63‑1 (MQ=255) ctgcCCGCAAGGCCTCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAAt < 1:6690908/63‑1 (MQ=255) tgatttcaagcagacgatgatccatagttcctccagatggatcgggttatgaatGCATAAAt > 1:557150‑M1/55‑62 (MQ=255) tgatttcaagcagacgatgatccatagttcctccagatggatcgggttatgaatGCATAAAt > 1:7154284‑M1/55‑62 (MQ=255) gcCCGCAAGGCCTCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGa > 1:4444842/1‑69 (MQ=255) cccGCAAGGCCTCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGAt > 1:5163621/1‑69 (MQ=255) gCAAGGCCTCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGAt > 1:6588852/1‑71 (MQ=255) caagcagacgatgatccatagttcctccagatggatcgggttatgaatGCATAAATGATTATGATAAGAtt < 1:6541338‑M1/23‑1 (MQ=255) caagcagacgatgatccatagttcctccagatggatcgggttatgaatGCATAAATGATTATGATAAGAtt < 1:3522829‑M1/23‑1 (MQ=255) caagcagacgatgatccatagttcctccagatggatcgggttatgaatGCATAAATGATTATGATAAGAtt < 1:2336016‑M1/23‑1 (MQ=255) cAAGGCCTCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTAtt < 1:2355157/63‑2 (MQ=255) cAAGGCCTCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGAtt < 1:1067219/71‑1 (MQ=255) cAAGGCCTCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGAtt < 1:4722560/71‑1 (MQ=255) aagcagacgatgatccatagttcctccagatggatcgggttatgaatGCATAAATGATTATGATAAGAtt < 1:5916423‑M1/23‑1 (MQ=255) aaGGCCTCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGAtt > 1:2577353/1‑70 (MQ=255) ggCCTCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTAt < 1:3091107/71‑1 (MQ=255) gCCTCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTAt < 1:430257/70‑1 (MQ=255) cagacgatgatccatagttcctccagatggatcgggttatgaatGCATaaa > 1:5516594‑M1/45‑51 (MQ=255) cagacgatgatccatagttcctccagatggatcgggttatgaatGCATAAATGATTATGATAAGATTTATg > 1:1187675‑M1/45‑71 (MQ=255) gacgatgatccatagttcctccagatggatcgggttatgaatGCATAAATGATTATGATAAGATTTATg > 1:998588‑M1/43‑69 (MQ=255) ctctTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATa < 1:5473309/47‑1 (MQ=255) ctctTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGAt > 1:681818/1‑64 (MQ=255) tctTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATg < 1:3393526/68‑1 (MQ=255) tctTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATg < 1:6222104/68‑1 (MQ=255) acgatgatccatagttcctccagatggatcgggttatgaatGCAt > 1:2210222‑M1/42‑45 (MQ=255) acgatgatccatagttcctccagatggatcgggttatgaatGCAt > 1:5861387‑M1/42‑45 (MQ=255) acgatgatccatagttcctccagatggatcgggttatgaatGCAt > 1:5622549‑M1/42‑45 (MQ=255) acgatgatccatagttcctccagatggatcgggttatgaatGCAt > 1:229443‑M1/42‑45 (MQ=255) acgatgatccatagttcctccagatggatcgggttatgaatGCAt > 1:4524228‑M1/42‑45 (MQ=255) acgatgatccatagttcctccagatggatcgggttatgaatGCAt > 1:6791555‑M1/42‑45 (MQ=255) acgatgatccatagttcctccagatggatcgggttatgaatGCAt > 1:6289848‑M1/42‑45 (MQ=255) acgatgatccatagttcctccagatggatcgggttatgaatGCAt > 1:6365267‑M1/42‑45 (MQ=255) acgatgatccatagttcctccagatggatcgggttatgaatGCATAAATGATTATGATAAGATTTATGc > 1:2646792‑M1/42‑69 (MQ=255) ctTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCAtt > 1:981607/1‑71 (MQ=255) ctTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCAtt > 1:6012945/1‑71 (MQ=255) tttACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGAtt < 1:6201438/62‑1 (MQ=255) tttACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGAtt < 1:5924587/62‑1 (MQ=255) tttACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCAtt > 1:1837140/1‑70 (MQ=255) tttACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCAt < 1:1255822/69‑1 (MQ=255) gatgatccatagttcctccagatggatcgggttatgaatGCATaa < 1:6950931‑M1/6‑1 (MQ=255) gatgatccatagttcctccagatggatcgggttatgaatGCATaa < 1:6207486‑M1/6‑1 (MQ=255) aCTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCAt > 1:3171221/1‑70 (MQ=255) aCTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCAt < 1:1223529/70‑1 (MQ=255) cTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATa < 1:2149916/70‑1 (MQ=255) tGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCa > 1:6672759/1‑63 (MQ=255) ccatagttcctccagatggatcgggttatgaatGc > 1:4203716‑M1/34‑35 (MQ=255) ccatagttcctccagatggatcgggttatgaatGc > 1:6801883‑M1/34‑35 (MQ=255) ccatagttcctccagatggatcgggttatgaatGCATa < 1:6305577‑M1/5‑1 (MQ=255) ccatagttcctccagatggatcgggttatgaatGCATa < 1:633846‑M1/5‑1 (MQ=255) aTTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGAttt < 1:2313925/56‑1 (MQ=255) ttGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAAccc > 1:6399635/1‑70 (MQ=255) ttGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCg < 1:7025322/71‑1 (MQ=255) atagttcctccagatggatcgggttatgaatGCATAAAt < 1:7198083‑M1/8‑1 (MQ=255) tGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGAtt > 1:7206665/1‑53 (MQ=255) tGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGAtt > 1:6796822/1‑53 (MQ=255) tGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGAtt > 1:4804028/1‑53 (MQ=255) gCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGAt > 1:7630244/1‑71 (MQ=255) ccGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGAt < 1:2573583/70‑1 (MQ=255) ccGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGAt < 1:4065142/70‑1 (MQ=255) aCCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGa > 1:163665/1‑40 (MQ=255) ccGGCTGGGAAATAGACCCCGTCGCATAAATGAtt > 1:500852/1‑35 (MQ=255) ccGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCATCt > 1:5900043/1‑71 (MQ=255) tGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATaa < 1:1193108/54‑1 (MQ=255) ggAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCATCTggagg < 1:2311298/69‑1 (MQ=255) gAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCATCTGGAGGAAc < 1:1473724/71‑1 (MQ=255) aTAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAAccc > 1:4200082/1‑51 (MQ=255) tAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATa > 1:1053991/1‑46 (MQ=255) tAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATg < 1:5597387/71‑1 (MQ=255) gACCCCGTCGCATAAATGATTATGATAAGATTTAt > 1:7856429/1‑35 (MQ=255) ccccGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGatc < 1:1544901/71‑1 (MQ=255) cccGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGatca < 1:6762581/71‑1 (MQ=255) cccGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGatca < 1:1047335/71‑1 (MQ=255) cGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGatcat > 1:3074995/1‑70 (MQ=255) gTCGCATAAATGATTATGATAAGATTTATGCATTCATAAccc < 1:3055826/42‑1 (MQ=255) gTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCATCTggagg < 1:1597268/56‑1 (MQ=255) gTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCATCTggagg < 1:624398/56‑1 (MQ=255) gTCGCATAAACGATTATGATAAGATTTATGCATTCATAACCCGATCCATCTggagg < 1:664025/56‑1 (MQ=255) | GTGACATTAGGATGCTGCCCGCAAGGCCTCTTTACTGATTGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCAT > W3110S.gb/970969‑971103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |