| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 1209382 | 21 (0.260) | 27 (0.490) | 19/66 | NT | 63.4% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | W3110S.gb | = 1211179 | 17 (0.310) | pseudogene (54/537 nt) | stfE | ECK1143:JW5172:b1157; e14 prophage region; predicted side tail fiber protein fragment | |||||
Only 100 of 152 total aligned reads displayed.
TCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGT > W3110S.gb/1209314‑1209452 | tCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGct > 1:7804069‑M1/1‑69 (MQ=255) aaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCa < 1:3677216‑M1/20‑1 (MQ=255) aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaaa > 1:4752611‑M1/50‑71 (MQ=255) tGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcat > 1:5605542‑M1/1‑63 (MQ=255) tGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc > 1:7514815/1‑71 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAg > 1:3136783‑M1/47‑64 (MQ=255) gcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACt > 1:494347‑M1/47‑71 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCa < 1:4191328/65‑1 (MQ=255) gCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCa < 1:3894454/65‑1 (MQ=255) gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCa > 1:4786835/1‑70 (MQ=255) gaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAAt < 1:4362623‑M1/29‑1 (MQ=255) aatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATg > 1:7583863‑M1/42‑71 (MQ=255) aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcatta > 1:4232620‑M1/1‑53 (MQ=255) aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagca < 1:6467110/70‑1 (MQ=255) aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa > 1:3489758/1‑71 (MQ=255) ccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGTAGCAAAACt > 1:4603535‑M1/35‑59 (MQ=255) ccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACt > 1:4912622‑M1/35‑59 (MQ=255) ccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACt > 1:4922017‑M1/35‑59 (MQ=255) catttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg > 1:808216‑M1/34‑49 (MQ=255) catttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg > 1:2352034‑M1/34‑49 (MQ=255) atttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAATGAGCAAAAc > 1:7735711‑M1/33‑56 (MQ=255) ttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg < 1:1260725‑M1/16‑1 (MQ=255) ttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCaa > 1:7407417‑M1/31‑51 (MQ=255) ttgcttgttatttcttcattttcataaacgTTGGTTTGGGACAAGGAGCAAAACTCAATGCAGCAACGGc < 1:5112596‑M1/40‑1 (MQ=255) tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccgg < 1:6594451‑M1/71‑27 (MQ=255) ggCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa > 1:7337304/1‑45 (MQ=255) gCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACa < 1:727140/71‑1 (MQ=255) ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg > 1:1872029‑M1/27‑42 (MQ=255) ttgttatttcttcattttcataaacgTTGGTTTGGGAGAAgg > 1:7117395‑M1/27‑42 (MQ=255) cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacct < 1:2569883‑M1/55‑14 (MQ=255) cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacct < 1:7555046‑M1/55‑14 (MQ=255) cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGc < 1:536885‑M1/43‑2 (MQ=255) cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAt > 1:5447905/1‑55 (MQ=255) aCTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAtt < 1:488360/71‑1 (MQ=255) gttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACAt < 1:2002635‑M1/45‑1 (MQ=255) cTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccg > 1:1248277‑M1/1‑40 (MQ=255) ttatttcttcattttcataaacgTTGGTTTGGGAGAAgg < 1:7691556‑M1/16‑1 (MQ=255) ttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg > 1:6987265‑M1/24‑71 (MQ=255) gtgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtg > 1:1503383‑M1/1‑38 (MQ=255) tgCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgt < 1:5905285‑M1/69‑33 (MQ=255) cAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggc < 1:1712111‑M1/70‑36 (MQ=255) aaaCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggcct < 1:3813022‑M1/71‑38 (MQ=255) cattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAc > 1:4164996‑M1/15‑69 (MQ=255) cattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAc > 1:6949859‑M1/15‑69 (MQ=255) cattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAc > 1:1387725‑M1/15‑69 (MQ=255) attttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACg < 1:5112107‑M1/52‑1 (MQ=255) ttttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAgg > 1:1065959‑M1/13‑61 (MQ=255) ctctCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagc > 1:2822006‑M1/1‑28 (MQ=255) ctctCGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccg < 1:3961053‑M1/53‑26 (MQ=255) tttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGtt < 1:6819474‑M1/60‑1 (MQ=255) tcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt > 1:2860930‑M1/10‑70 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagcca < 1:1026268‑M1/69‑45 (MQ=255) tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc < 1:5885834/49‑1 (MQ=255) cataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTc > 1:3355952‑M1/9‑70 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactcc > 1:3828222‑M1/1‑23 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt > 1:1852796‑M1/1‑23 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGctctgcattacctgttggt > 1:7282406‑M1/1‑23 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc < 1:2278279/47‑1 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc < 1:7682726/47‑1 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGc < 1:2040525/47‑1 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTc < 1:7163783/69‑1 (MQ=255) gAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCa > 1:331786/1‑70 (MQ=255) ataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGATGCACCGGTTTCa < 1:1637253‑M1/63‑1 (MQ=255) ataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGttt > 1:2014246‑M1/8‑68 (MQ=255) ataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCa > 1:4113732‑M1/8‑70 (MQ=255) aaaaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccg < 1:5785304‑M1/53‑32 (MQ=255) aaaaCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccg < 1:2419997‑M1/53‑32 (MQ=255) aaaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg < 1:1667403/71‑1 (MQ=255) aaCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTc > 1:2920397/1‑66 (MQ=255) acgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg > 1:6324226‑M1/4‑51 (MQ=255) acgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa < 1:6615993‑M1/50‑1 (MQ=255) acgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGCCGCAc < 1:2990914‑M1/55‑1 (MQ=255) aCCTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtgg > 1:4671651‑M1/1‑19 (MQ=255) ccTTGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaa < 1:2060444‑M1/71‑54 (MQ=255) gTTGGTTTGGGAGAAGGAGCAAAACTCAATgcagc > 1:6513563‑M1/2‑35 (MQ=255) gTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAg < 1:6834666‑M1/48‑1 (MQ=255) gTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa < 1:1709732‑M1/50‑1 (MQ=255) gTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGa < 1:37013‑M1/50‑1 (MQ=255) TTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtata < 1:3973206‑M1/71‑1 (MQ=255) TTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtata < 1:7152168‑M1/71‑1 (MQ=255) tGGTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacag > 1:6042471‑M1/1‑15 (MQ=255) tGGTTTGGGAGAAGGctctgcattacctgttggtgtcccg < 1:2297334‑M1/40‑26 (MQ=255) ggTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacagg > 1:3562175‑M1/1‑14 (MQ=255) ggTTTGGGAGAAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaac > 1:446240‑M1/1‑14 (MQ=255) GGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtata > 1:1661138‑M1/1‑69 (MQ=255) GTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCgg < 1:6932857‑M1/55‑1 (MQ=255) TGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt > 1:1696151‑M1/1‑70 (MQ=255) TGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt < 1:7824206‑M1/70‑1 (MQ=255) GGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCg < 1:6461168‑M1/67‑1 (MQ=255) GGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAc > 1:5836142‑M1/1‑47 (MQ=255) GGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAc > 1:6229372‑M1/1‑47 (MQ=255) gagaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctg < 1:3876628‑M1/71‑65 (MQ=255) gagaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgccaacaggctggctg < 1:1374569‑M1/71‑65 (MQ=255) gaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcc > 1:5528247‑M1/1‑5 (MQ=255) gaAGGctctgcattacctgttggtgtcccggttccgtggccttcagccactccgcc > 1:1585874‑M1/1‑5 (MQ=255) gaAGGctctgcattacctgttggtgtcccggttcc > 1:6107854‑M1/1‑5 (MQ=255) GAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt < 1:7547115‑M1/53‑1 (MQ=255) AAGGAGCAAAACTCAATGCAG‑AACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGAtt > 1:4014211‑M1/1‑70 (MQ=255) GGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTgg > 1:7763743‑M1/1‑71 (MQ=255) gctctgcattacctgttggtgtcccgggtccgtggccttcagccactccgccaacaggctggctgtaatgc < 1:304721‑M1/71‑71 (MQ=255) | TCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGT > W3110S.gb/1209314‑1209452 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |