| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2469854 = | 75 (0.920) | 9 (0.120) | 4/90 | NT | 13.9% | coding (600/756 nt) | vacJ | predicted lipoprotein |
| ? | W3110S.gb | 2469887 = | 43 (0.580) | coding (567/756 nt) | vacJ | predicted lipoprotein | |||||
Only 100 of 111 total aligned reads displayed.
TGAAATCATGACGCTGGAAGTACGCTTCGCGCACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCAAGCGTCCATTTACCCACAGACATCGGC > W3110S.gb/2469784‑2469920 | tGAAATCATGACGCTGGAAGTACGCTTCGCGCACCATAATATAAGGATCGGACGACTGACGCAGCAGACCa > 1:7151052/1‑71 (MQ=255)tGAAATCATGACGCTGGAAGTACGCTTCGCGCACCATAATATAAGGATCGGACGACTGACGCAGCAGACCa > 1:7517178/1‑71 (MQ=255) gatggtttttacccggttctttcctggctgacctggccgatgtctgtgggtaaatggacgcttgaagggAt < 1:1452560‑M1/2‑1 (MQ=255) aaaTCATGACGCTGGAAGTACGCTTCGCGCACCATAATATAAGGATCGGACGACTGACGCAGCAGACCAt < 1:5069887/70‑1 (MQ=255) tggtttttacccggttctttcctggctgacctggccgatgtctgtgggtaaatggacgcttgaagggATc < 1:1400374‑M1/3‑1 (MQ=255) tggtttttacccggttctttcctggctgacctggccgatgtctgtgggtaaatggacgcttgaagggATc < 1:5044432‑M1/3‑1 (MQ=255) aTCATGACGCTGGAAGTACGCTTCGCGCACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCgg < 1:3833189/71‑1 (MQ=255) tCATGACGCTGGAAGTACGCTTCGCGCACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCgg > 1:6484577/1‑70 (MQ=255) tCATGACGCTGGAAGTACGCTTCGCGCACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCgg > 1:6337969/1‑70 (MQ=255) tCATGACGCTGGAAGTACGCTTCGCGCACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGa < 1:3562248/71‑1 (MQ=255) tCATGACGCTGGAAGTACGCTTCGCGCACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGa < 1:1852177/71‑1 (MQ=255) aTGACGCTGGAAGTACGCTTCGCGCACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAAt > 1:3169758/1‑71 (MQ=255) aTGACGCTGGAAGTACGCTTCGCGCACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAAt > 1:3132793/1‑71 (MQ=255) aTGACGCTGGAAGTACGCTTCGCGCACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAAt > 1:2644464/1‑71 (MQ=255) tttacccggttctttcctggctgacctggccgatgtctgtgggtaaatggacgcttgaagggAt < 1:4627286‑M1/2‑1 (MQ=255) gCTGGAAGTACGCTTCGCGCACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCcag > 1:3948186/1‑70 (MQ=255) gAAGTACGCTTCGCGCACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCt > 1:4960081/1‑71 (MQ=255) aaGTACGCTTCGCGCACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCt > 1:6043888/1‑70 (MQ=255) gTACGCTTCGCGCACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAg < 1:2078463/71‑1 (MQ=255) ctttcctggctgacctggccgatgtctgtgggtaaatggacgcttgaagggATCg > 1:4995091‑M1/52‑55 (MQ=255) ctttcctggctgacctggccgatgtctgtgggtaaatggacgcttgaagggATCg > 1:410527‑M1/52‑55 (MQ=255) tACGCTTCGCGCACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAgc < 1:6139455/71‑1 (MQ=255) tcctggctgacctggccgatgtctgtgggtaaatggacgcttgaagggATc < 1:5806635‑M1/3‑1 (MQ=255) tcctggctgacctggccgatgtctgtgggtaaatggacgcttgaagggATc < 1:2915507‑M1/3‑1 (MQ=255) ctggctgacctggccgatgtctgtgggtaaatggacgcttgaaggga > 1:1704533‑M1/47‑47 (MQ=255) ctggctgacctggccgatgtctgtgggtaaatggacgcttgaaggga > 1:5742521‑M1/47‑47 (MQ=255) ctggctgacctggccgatgtctgtgggtaaatggacgcttgaaggga > 1:1121416‑M1/47‑47 (MQ=255) cTTCGCGCACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCgg < 1:805735/71‑1 (MQ=255) cgcgCACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGt < 1:5213957/70‑1 (MQ=255) gcgcACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCcagca > 1:6218111/1‑56 (MQ=255) gcgcACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGttt > 1:7471308/1‑71 (MQ=255) gcgcACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGt < 1:1546509/69‑1 (MQ=255) tgacctggccgatgtctgtgggtaaatggacgcttgaagggATCGGAATCCAGCAGCTGAGCGCGGGtt < 1:4512025‑M1/28‑1 (MQ=255) cgcACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTc < 1:6175659/71‑1 (MQ=255) cACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGa > 1:7807799/1‑58 (MQ=255) cACCATAATATAAGGATAGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGa > 1:1313304/1‑58 (MQ=255) cctggccgatgtctgtgggtaaatggacgcttgaagggAt > 1:4536503‑M1/39‑40 (MQ=255) aCCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGcgcg < 1:1935914/62‑1 (MQ=255) aCCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGcgcg < 1:7357004/62‑1 (MQ=255) aCCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGAt < 1:1691875/71‑1 (MQ=255) aCCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGAt < 1:7720563/71‑1 (MQ=255) ctggccgatgtctgtgggtaaatggacgcttgaagggATCGGAATCCAGCAGCTGAg > 1:457947‑M1/38‑57 (MQ=255) ccATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCagcagc > 1:7465667/1‑53 (MQ=255) ataataTAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATccc < 1:5974362/71‑1 (MQ=255) taataTAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCt > 1:898951/1‑71 (MQ=255) aataTAAGGATCGGACGACTGACGCAGCAGACCATCGGAATcc < 1:6842120/43‑1 (MQ=255) aataTAAGGATCGGACGACTGACGCAGCAGACCATCGGAATcc < 1:878549/43‑1 (MQ=255) aataTAAGGATCGGACGACTGACGCAGCAGACCATCGGAATcc < 1:3502922/43‑1 (MQ=255) aataTAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCt > 1:1779505/1‑70 (MQ=255) atatAAGGATCGGACGACTGACGCAGCAGACCATCGGAATcc < 1:3049668/42‑1 (MQ=255) atatAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCtt > 1:3600124/1‑70 (MQ=255) atatAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCtt > 1:3966089/1‑70 (MQ=255) tataAGGATCGGACGACTGACGCAGCAGACCATCGGAATCca > 1:1703240/1‑42 (MQ=255) tataAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAgcgc < 1:7627391/54‑1 (MQ=255) tataAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTc > 1:5512390/1‑70 (MQ=255) aaGGATCGGACGACTGACGCAGCAGACCATCGGaa > 1:6889856/1‑35 (MQ=255) aaGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCAAGc > 1:7695441/1‑71 (MQ=255) aGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGttt < 1:7848339/56‑1 (MQ=255) aGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCaa > 1:7805229/1‑68 (MQ=255) aGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCAAGc > 1:2435565/1‑70 (MQ=255) aGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGAAGCt > 1:3719640/1‑44 (MQ=255) ggATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAgcgc < 1:702959/49‑1 (MQ=255) ggATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGttt < 1:4508205/55‑1 (MQ=255) ggATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGttt < 1:4498710/55‑1 (MQ=255) ggATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCAAGCGt > 1:3335319/1‑71 (MQ=255) ggATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCAAGCGt > 1:3344399/1‑71 (MQ=255) ctgtgggtaaatggacgcttgaagggATCGGAATCCAGCAGCTGAGCGCGGGttt < 1:7510364‑M1/29‑1 (MQ=255) ctgtgggtaaatggacgcttgaagggATCGGAATCCAGCAGCTGAGCGCGGGttt < 1:2248110‑M1/29‑1 (MQ=255) ctgtgggtaaatggacgcttgaagggATCGGAATCCAGCAGCTGAGCGCGGGttt < 1:3726716‑M1/29‑1 (MQ=255) gATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATcc < 1:903827/60‑1 (MQ=255) tCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGa > 1:1513595/1‑55 (MQ=255) ggACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCtt < 1:3241991/59‑1 (MQ=255) gacgacTGACGCAGCAGACCATCGGAATCcagcag > 1:5033804/1‑35 (MQ=255) gacgacTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCAAGCGTCCAt > 1:6647784/1‑69 (MQ=255) acgacTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGcgcg < 1:3301625/43‑1 (MQ=255) acgacTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCa > 1:3322844/1‑59 (MQ=255) cgacTGACGCAGCAGACCATCGGAATCCAGCAGCTGAgcgc > 1:2620625/1‑41 (MQ=255) cgacTGACGCAGCAGACCATCGGAATCCAGCAGCTGAgcgc > 1:7104440/1‑41 (MQ=255) cgacTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCAAGCGTCCATTTAc > 1:3619447/1‑71 (MQ=255) gacTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGt < 1:6649369/44‑1 (MQ=255) atggacgcttgaagggATCGGAATCCAGCATCTGAgc > 1:1014045‑M1/17‑37 (MQ=255) atggacgcttgaagggATCGGAATCCAGCAGCTGAgc > 1:4431540‑M1/17‑37 (MQ=255) atggacgcttgaagggATCGGAATCCAGCAGCTGAgc > 1:1263897‑M1/17‑37 (MQ=255) atggacgcttgaagggATCGGAATCCAGCAGCTGAgc > 1:5833631‑M1/17‑37 (MQ=255) cTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCAAGCGTCCATTTACCca > 1:7544177/1‑71 (MQ=255) tGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCg < 1:3924383/45‑1 (MQ=255) aCGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCAAGCGTCCATTTACCca > 1:3285051/1‑68 (MQ=255) aCGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCATTCAAGCGTCCATTTACCcac < 1:124850/69‑1 (MQ=255) gcagcaGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCAAGCGTCCATTTACCCACAGAc < 1:7344822/71‑1 (MQ=255) gcagACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCAAGCGTCCATTTACCCACAGACATc < 1:1159470/71‑1 (MQ=255) gcagACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCAAGCGTCCATTTACCCACAGACATc > 1:4910237/1‑71 (MQ=255) gcagACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCAAGCGTCCATTTACCCACAGACATc < 1:2443069/71‑1 (MQ=255) cagACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCAAGCGTCCATTTACCCACAGACATCg > 1:6055054/1‑71 (MQ=255) cagACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCAAGCGTCCATTTACCCACAGACATCg < 1:1305936/71‑1 (MQ=255) gACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCAAGCGTCCATTTACCCACAGACATCGGc < 1:2346315/71‑1 (MQ=255) gACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCAAGCGTCCATTTACCCACAGACATCGGc < 1:4775656/71‑1 (MQ=255) gACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCAAGCGTCCATTTACCCACAGACATCGGc < 1:4290592/71‑1 (MQ=255) gACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCAAGCGTCCATTTACCCACAGACATCGGc < 1:6983802/71‑1 (MQ=255) aCCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTc < 1:2868843/42‑1 (MQ=255) aCCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCAAGCGTCCATTTACCCACAGATATCGGc < 1:1014114/70‑1 (MQ=255) | TGAAATCATGACGCTGGAAGTACGCTTCGCGCACCATAATATAAGGATCGGACGACTGACGCAGCAGACCATCGGAATCCAGCAGCTGAGCGCGGGTTTCGATCCCTTCAAGCGTCCATTTACCCACAGACATCGGC > W3110S.gb/2469784‑2469920 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |