BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	3790748 =	84 (1.030)	8 (0.110)	4/86	NT	10.5%	coding (468/1503 nt)	uhpB	sensory histidine kinase in two‑component regulatory sytem with UhpA
*	?	W3110S.gb	3790779 =	62 (0.870)	8 (0.110)	4/86	NT	10.5%	coding (499/1503 nt)	uhpB	sensory histidine kinase in two‑component regulatory sytem with UhpA

Only 100 of 110 total aligned reads displayed.

ACGGCAAAGAGTCGTGGAATGCGCTGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGTCACTGGTTTCTCAGCCAATC  >  W3110S.gb/3790678‑3790817

agtaccagaccagatgtcgcccgcgccagttgattggctgagaaaccagtgacggaccgagcggcagccag                                                                       >  1:6456665‑M1/71‑71 (MQ=255)

agtaccagaccagatgtcgcccgcgccagttgattggctgagaaaccagtgacggaccgagcggcagccag                                                                       >  1:4942017‑M1/71‑71 (MQ=255)

  ggCAAAGAGTCGTGGAATGCGCTGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGgt                                                                     >  1:1131330/1‑71 (MQ=255)

   gCAAAGAGTCGTGGAATGCGCTGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGgtg                                                                    <  1:1192572/71‑1 (MQ=255)

    ccagaccagatgtcgcccgcgccagttgattggctgagaaaccagtgacggaccgagcggcagccaGgtgt                                                                   >  1:5169159‑M1/67‑71 (MQ=255)

    ccagaccagatgtcgcccgcgccagttgattggctgagaaaccagtgacggaccgagcggcagccaGgtgt                                                                   >  1:1917682‑M1/67‑71 (MQ=255)

    cAAAGAGTCGTGGAATGCGCTGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTg                                                                       <  1:5287935/67‑1 (MQ=255)

      aaGAGTCGTGGAATGCGCTGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTc                                                                 >  1:3532755/1‑71 (MQ=255)

       agagTCGTGGAATGCGCTGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCt                                                                >  1:3788492/1‑71 (MQ=255)

           tCGTGGAATGCGCTGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCa                                                            <  1:952482/71‑1 (MQ=255)

           tCGTGGAATGCGCTGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCa                                                            <  1:3286139/71‑1 (MQ=255)

           tCGTGGAATGCGCTGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCa                                                            <  1:2802531/71‑1 (MQ=255)

             gTGGAATGCGCTGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCAc                                                           >  1:5037145/1‑70 (MQ=255)

             gTGGAATGCGCTGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACt                                                          <  1:5246221/71‑1 (MQ=255)

             gTGGAATGCGCTGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACt                                                          <  1:6213241/71‑1 (MQ=255)

             gTGGAATGCGCTGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACt                                                          <  1:5382710/71‑1 (MQ=255)

                gAATGCGCTGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTc                                                                 >  1:7890691/1‑61 (MQ=255)

                gAATGCGCTGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTAtc                                                       >  1:6853778/1‑71 (MQ=255)

                gAATGCGCTGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTAtc                                                       >  1:7758325/1‑71 (MQ=255)

                gAATGCGCTGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTAtc                                                       >  1:4529789/1‑71 (MQ=255)

                  gcccgcgccagttgattggctgagaaaccagtgacggaccgagcggcagcctGGTGTTCTGGCACTAtctc                                                     <  1:7216317‑M1/19‑1 (MQ=255)

                     cgcTGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGcc                                                  <  1:7737830/71‑1 (MQ=255)

                       cTGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCaa                                                >  1:2254995/1‑71 (MQ=255)

                       cTGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCaa                                                >  1:209009/1‑71 (MQ=255)

                        tGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTTTTCTgg                                                              >  1:3387067/1‑56 (MQ=255)

                        tGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCt                                                                <  1:6804971/54‑1 (MQ=255)

                          ttGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAAt                                               <  1:3143177/69‑1 (MQ=255)

                          ttGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATaa                                             <  1:6513947/71‑1 (MQ=255)

                          ttGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATaa                                             <  1:5372536/71‑1 (MQ=255)

                          ttGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATaa                                             >  1:2731577/1‑71 (MQ=255)

                            gCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAaca                                           >  1:3712011/1‑71 (MQ=255)

                              tGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCaa                                                <  1:4456554/64‑1 (MQ=255)

                              tGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAac                                            >  1:6691777/1‑68 (MQ=255)

                               gattggctgagaaaccagtgacggaccgagcggcagccag                                                                       <  1:3699657‑M1/1‑1 (MQ=255)

                                aCTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGc                                                   >  1:4758684/1‑59 (MQ=255)

                                 cTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTgg                                      >  1:3815469/1‑71 (MQ=255)

                                  tttAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCt                                                                <  1:7742212/44‑1 (MQ=255)

                                  tttAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCt                                        <  1:4468270/68‑1 (MQ=255)

                                  tttAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCt                                        <  1:4926772/68‑1 (MQ=255)

                                   ttAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCg                                                    <  1:6631112/55‑1 (MQ=255)

                                    tAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCg                                                    >  1:798886/1‑54 (MQ=255)

                                    tAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTgg                                      >  1:7041517/1‑68 (MQ=255)

                                    tAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTg                                   >  1:6139739/1‑71 (MQ=255)

                                     aaCTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTg                                   <  1:1611066/70‑1 (MQ=255)

                                        tGGCGGCCTGACGCGGGCCCCGATATGTCTGGTGTTCTgg                                                              <  1:775559/40‑1 (MQ=255)

                                        agaaaccagtgacggaccgagcggcagccaGGTGTTCTGGCACTATCTCGCCAATAaca                                           <  1:6503253‑M1/29‑1 (MQ=255)

                                        agaaaccagtgacggaccgagcggcagccaGGTGTTCTGGCACTATCTCGCCAATAaca                                           <  1:2042169‑M1/29‑1 (MQ=255)

                                         ggcggcCTGACGCTGGCCCCGATATGTCTGGGGTTCTGGCACTATCTCGCCAATAac                                            <  1:7742532/57‑1 (MQ=255)

                                          gcggcCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGcc                                                            >  1:3051235/1‑39 (MQ=255)

                                          gcggcCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATaa                                             >  1:5631665/1‑55 (MQ=255)

                                          gcggcCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCt                              <  1:5516669/70‑1 (MQ=255)

                                          gcggcCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTc                             >  1:5444302/1‑71 (MQ=255)

                                          gcggcCTGACGCTGGCCCCGATATGTCTGGTGTTATGGCa                                                            >  1:7084073/1‑40 (MQ=255)

                                          aaaccagtgacggaccgagcggcagccaGGTGTTCTGGCACTATCTCGCCAAt                                               >  1:5809952‑M1/29‑53 (MQ=255)

                                          aaaccagtgacggaccgagcggcagccaGGTGTTCTGGCACTATCTCGCCAAt                                               >  1:4944161‑M1/29‑53 (MQ=255)

                                          aaaccagtgacggaccgagcggcagccaGGTGTTCTGGCACTATCTCGCCAAt                                               >  1:1847807‑M1/29‑53 (MQ=255)

                                            ggcCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCgg                           <  1:4318859/71‑1 (MQ=255)

                                             gcCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGt                          >  1:2776094/1‑71 (MQ=255)

                                              cagtgacggaccgagcggcagccaGGTGTTCTGGCACTATCTCGCCAATAacac                                          <  1:7004064‑M1/30‑1 (MQ=255)

                                              cagtgacggacagagcggcagccaGGTGTTCTGGCACTATCTCGCCAATAacac                                          <  1:1458092‑M1/30‑1 (MQ=255)

                                               cTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTcc                        <  1:4581488/71‑1 (MQ=255)

                                               cTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTcc                        >  1:2475927/1‑71 (MQ=255)

                                                tGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAAt                                               <  1:5418102/47‑1 (MQ=255)

                                                 gACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAacac                                          <  1:4947413/51‑1 (MQ=255)

                                                 gACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAacac                                          <  1:5999150/51‑1 (MQ=255)

                                                 gACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAacac                                          <  1:7082027/51‑1 (MQ=255)

                                                 gACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGt                      >  1:6414000/1‑71 (MQ=255)

                                                 gACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGt                      >  1:1126651/1‑71 (MQ=255)

                                                 gACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGt                      >  1:1862881/1‑71 (MQ=255)

                                                 gACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGt                      >  1:4049873/1‑71 (MQ=255)

                                                  aCGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGt                      >  1:2069913/1‑70 (MQ=255)

                                                  aCGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACAACTGGCTGCCGCTCGGTCCGt                      <  1:7106678/70‑1 (MQ=255)

                                                   cGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCaa                                                >  1:31688/1‑43 (MQ=255)

                                                   cGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTg                                   >  1:1558721/1‑56 (MQ=255)

                                                   cGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCTCTCGGTCCGTCa                    >  1:4095302/1‑71 (MQ=255)

                                                    gCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGcc                                                  >  1:2010079/1‑40 (MQ=255)

                                                    gCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGcc                                                  >  1:2172619/1‑40 (MQ=255)

                                                    gCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCaa                                                <  1:7595220/42‑1 (MQ=255)

                                                    gCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCaa                                                <  1:7905586/42‑1 (MQ=255)

                                                    gCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGTCAc                   >  1:2686792/1‑71 (MQ=255)

                                                      tGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGTCACTg                 >  1:7270195/1‑71 (MQ=255)

                                                        gCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCt                              <  1:2745163/56‑1 (MQ=255)

                                                        gCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGTCACTgg                <  1:2425763/70‑1 (MQ=255)

                                                        gCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGTCACTg                 <  1:6081986/69‑1 (MQ=255)

                                                        gCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGTCACTg                 <  1:421246/69‑1 (MQ=255)

                                                        gCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACATGGCTGCCGCTCGGTCCGTCACTGGt               >  1:4058813/1‑71 (MQ=255)

                                                          cccGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGc                                     <  1:3992729/47‑1 (MQ=255)

                                                          cccGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGc                                     <  1:5005002/47‑1 (MQ=255)

                                                              atatGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGTCACTGGTTTCTCa         <  1:1312628/71‑1 (MQ=255)

                                                               tatGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGTCACTGGTTTCTCAg        >  1:1202824/1‑71 (MQ=255)

                                                               tatGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGTCACTGGTTTCTCAg        >  1:2634719/1‑71 (MQ=255)

                                                                 tGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGTCACTGGTTTCTCAGcc      <  1:2917000/71‑1 (MQ=255)

                                                                 tGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGTCACTGGTTTCTCAGcc      <  1:7522758/71‑1 (MQ=255)

                                                                 tGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGTCACTGGTTTCTCAGc       >  1:1177780/1‑70 (MQ=255)

                                                                  gTCTGGTGTTCTGGCAGTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGTCACTGGTTtctc          >  1:1744200/1‑66 (MQ=255)

                                                                  gTCTGGTGTTATGGCACTATCTCGCCAATAACACCTGGCTGCCGCTAGGTCCg                       >  1:1893054/1‑53 (MQ=255)

                                                                   tCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGTCACTGGTTTCTCAGCCa     <  1:3632060/70‑1 (MQ=255)

                                                                     tGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGTCACTGGTTTCTCAGCCAAt   >  1:2784187/1‑70 (MQ=255)

                                                                     tGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGTCACTGGTTTCTCAGCCAAt   >  1:6171859/1‑70 (MQ=255)

                                                                      GGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGTCACTGGTTTCTCAGCCAATc  <  1:1381139‑M1/70‑1 (MQ=255)

ACGGCAAAGAGTCGTGGAATGCGCTGTTGCTGACTTTAACTGGCGGCCTGACGCTGGCCCCGATATGTCTGGTGTTCTGGCACTATCTCGCCAATAACACCTGGCTGCCGCTCGGTCCGTCACTGGTTTCTCAGCCAATC  >  W3110S.gb/3790678‑3790817

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.